PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.2G225800.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family GeBP
Protein Properties Length: 444aa    MW: 47349.6 Da    PI: 8.4439
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.2G225800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57392.93.6e-29192290298
              DUF573   2 lfqrlwseeDeivlLqGlidfkaktgk..spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkife 90 
                         +++rlws  De+v+L+Gl  ++ak+g+   +++di +f+  +++++s++v+ +q+++K+rrLK+K++   ++ak+g++p++ ++hdq+++e
  Seita.2G225800.1.p 192 RPSRLWSPADELVILRGLAACRAKRGVlpGSMHDIAKFHGHIESELSVQVTVTQVSDKVRRLKQKYNLFASRAKNGRDPDLPTPHDQSVYE 282
                         679************************877888********************************************************** PP

              DUF573  91 lskkiWgs 98 
                         l k++Wg+
  Seita.2G225800.1.p 283 LGKRVWGT 290
                         ******95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.0E-26194289IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MAPKRPAAAP SGSASEASDA EADAPLHHPS SPSPSKTPPP PNPNPKSSAA AAAAMAAEDS  60
AAAGSDSGAA YDSDADHRPA LRKEGAAASP SRRPRSPRPP SRSRSPDAAS ESDGAASDAD  120
PAAGDGADSA DDGNASPLPA PRPPRGEAAA IKPLSSRPMD PPRHSMVPSF TEPRRKRPRS  180
VAVPSSVEQL KRPSRLWSPA DELVILRGLA ACRAKRGVLP GSMHDIAKFH GHIESELSVQ  240
VTVTQVSDKV RRLKQKYNLF ASRAKNGRDP DLPTPHDQSV YELGKRVWGT TDIAGGGSTA  300
GDGYEISGGG GESEEEREIG ESDEDEDSGR DDRARKNRRL RPITMANGNV AGFGAVNVNS  360
RGKFDFEKGK DAYPYLWETV EDLSKEHPHG VAFKKAFELI EGPKARGMEE KLRKFRLTEI  420
RHQLRRMELM KETVKMVLDA LEG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.2G225800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004956982.10.0STOREKEEPER protein
TrEMBLA0A368Q2590.0A0A368Q259_SETIT; Uncharacterized protein
STRINGGRMZM2G092409_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26713587
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00390.12e-14DNA-binding storekeeper protein-related transcriptional regulator