PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.2G224000.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family HD-ZIP
Protein Properties Length: 423aa    MW: 44411.6 Da    PI: 8.8872
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.2G224000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox54.91.5e-17244298256
                         T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         rk+ +++keq   Lee F+++ +++ +++  LAk+l+L  rqV vWFqNrRa+ k
  Seita.2G224000.1.p 244 RKKLRLSKEQSAFLEESFKEHATLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 298
                         788899***********************************************98 PP
2HD-ZIP_I/II1261.7e-40244334192
         HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                         +kk+rlskeq+++LEesF+e+ +L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +l
  Seita.2G224000.1.p 244 RKKLRLSKEQSAFLEESFKEHATLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELAELR-AL 333
                         69*************************************************************************************9.55 PP

         HD-ZIP_I/II  92 k 92 
                         k
  Seita.2G224000.1.p 334 K 334
                         5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.9E-18229294IPR009057Homeodomain-like
SuperFamilySSF466893.34E-18233301IPR009057Homeodomain-like
PROSITE profilePS5007116.989240300IPR001356Homeobox domain
SMARTSM003891.0E-15242304IPR001356Homeobox domain
PfamPF000465.3E-15244298IPR001356Homeobox domain
CDDcd000861.62E-15244301No hitNo description
PROSITE patternPS000270275298IPR017970Homeobox, conserved site
SMARTSM003401.4E-24300343IPR003106Leucine zipper, homeobox-associated
PfamPF021831.7E-10300334IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MNPPPRTQLS FSGSRAVRVN WSNPPLSLTG AYAPGRREGG GPWVSSSGRC RYKASLSWRV  60
PTVPLLVPGR MELGLSLGET MADAGRDLVL GLGMGLGVRR DEEAETGREV RREHEFGAGR  120
CGRSSPEPAV RLTLLPGLVP SLGLPWPPSS ETSRHLEAST RGFDVNRAPS LSVAGAAAED  180
EEEQDDAAGA GAGAAAAASS SPNNSAGSFP TDFSAQGQAG TGGGGGGDRA GSRASDEDDG  240
GSARKKLRLS KEQSAFLEES FKEHATLNPK QKLALAKQLN LRPRQVEVWF QNRRARTKLK  300
QTEVDCEYLK RCCETLTEEN RRLQKELAEL RALKTVHPFY MHLPATTLSM CPSCERVASN  360
SSAPAAAAPA PASSSSPSAA GGGIAAAPPE QRPSSFAALF SSPLNRPQAA QPQPQPQAPA  420
SS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1292300RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.2G224000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004956965.10.0homeobox-leucine zipper protein HOX11
SwissprotQ67UE21e-146HOX11_ORYSJ; Homeobox-leucine zipper protein HOX11
TrEMBLA0A368Q1J20.0A0A368Q1J2_SETIT; Uncharacterized protein
STRINGSi030329m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP52093363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.13e-59homeobox from Arabidopsis thaliana