PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.2G215500.1.p | ||||||||
Common Name | LOC101785711, SETIT_030088mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | ERF | ||||||||
Protein Properties | Length: 397aa MW: 42571.1 Da PI: 4.4653 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.6 | 1.8e-19 | 131 | 180 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+G+r+++ +g+W+AeIrdps+ r++lg++ taeeAa+a++a ++k++g Seita.2G215500.1.p 131 QYRGIRQRP-WGKWAAEIRDPSK---GVRVWLGTYNTAEEAARAYDAEARKIRG 180 69*******.**********965...4*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 4.88E-32 | 131 | 189 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 2.1E-32 | 131 | 190 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 9.0E-38 | 131 | 194 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.16E-22 | 131 | 189 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.933 | 131 | 188 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.6E-11 | 132 | 143 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 6.6E-12 | 132 | 180 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.6E-11 | 154 | 170 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 397 aa Download sequence Send to blast |
MCGGAILSGF IRPSGAAAAA AKKQQQQQPR RVTADLLWPG LGSRKGALGE QDFEADFREF 60 VRGLGEDGGD ADAAGDDDDE VQEVPPPEPA MFTFAAAAKA APTAADDVMT PKPVQHDEPT 120 ATSAKRNRKN QYRGIRQRPW GKWAAEIRDP SKGVRVWLGT YNTAEEAARA YDAEARKIRG 180 KKAKVNFPDE EQDAQKSILK PTTANPTKLA PPTETCADEA FNNLNNGDND LFAMFAFSDS 240 KAPVKPAEIA SFLPAVRPHV PTKRSASNML SDQSSNSYGS SDFGWDDETM TSDYTSVFAP 300 NNAVPAYADP ACLQGEVSKR MRNTYGLAVP QGNGAPNLAQ DMSGFNPEMN YLPLSYVESS 360 PDTSMDSLLQ NDAPQDGAST GDLWSLDEML MAAGAF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 8e-20 | 130 | 188 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 9e-20 | 131 | 188 | 5 | 63 | ATERF1 |
3gcc_A | 9e-20 | 131 | 188 | 5 | 63 | ATERF1 |
5wx9_A | 3e-19 | 131 | 190 | 14 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 261 | 268 | TKRSASNM |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.2G215500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004956913.1 | 0.0 | ethylene-responsive transcription factor 1 | ||||
TrEMBL | K3ZU07 | 0.0 | K3ZU07_SETIT; Uncharacterized protein | ||||
STRING | Si030088m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11200 | 31 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G53910.3 | 2e-27 | related to AP2 12 |
Link Out ? help Back to Top | |
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Phytozome | Seita.2G215500.1.p |
Entrez Gene | 101785711 |