PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Seita.2G203800.1.p

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

NAC

Protein Properties

Length: 400aa MW: 44754.3 Da PI: 6.6212

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.2G203800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	169.4	1.1e-52	14	141	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 l pGfrFhPtdeelv +yLk+k+++k+l++ e i+++diyk++PwdLpk ++++ekewyf+++rd+ky+++ r+nr+t +g+Wkatg+d++ Seita.2G203800.1.p 14 LLPGFRFHPTDEELVGFYLKRKIQQKPLSI-ELIRQLDIYKYDPWDLPKLASTGEKEWYFYCPRDRKYRNSARPNRVTVAGFWKATGTDRP 103 579*************************.89***********9888999******************************** PP NAM 92 vlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++s+ +++ +glkk+Lvfykgra kg ktdW+mheyr+ Seita.2G203800.1.p 104 IYSSeGTKCIGLKKSLVFYKGRAAKGIKTDWMMHEYRM 141 956667**************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.96E-57	12	172	IPR003441	NAC domain
PROSITE profile	PS51005	56.884	14	172	IPR003441	NAC domain
Pfam	PF02365	7.7E-26	16	141	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 400 aa Download sequence Send to blast
MDERADMDKS DEVLLPGFRF HPTDEELVGF YLKRKIQQKP LSIELIRQLD IYKYDPWDLP 60 KLASTGEKEW YFYCPRDRKY RNSARPNRVT VAGFWKATGT DRPIYSSEGT KCIGLKKSLV 120 FYKGRAAKGI KTDWMMHEYR MPSLSDPSIP KTPKDKSIPA NDAWSICRIF KKPSSVAQRV 180 SSHSWGPQSI ATTTPELLSA LQSIQASHFA LESSSCSANQ FNSQQCFQGR QQQKLNSSQD 240 GSSCKVINFN RSLSLPQLSE KDTHSSPIIL PFETQSLEKS SAVTSVLLSM APEIVSSMNE 300 ALPNTEMEQL EPSYGYTDDW GIDANGAIGD KDDDPYTRKP VHVHSSGTEC GIPRKIKFPF 360 DLGVDSPDDW TSSIPCDSLP CPPPPTEMSN SSSTEKYYA*

Sequence ? help Back to Top

Protein Sequence Length: 400 aa Download sequence Send to blast

MDERADMDKS DEVLLPGFRF HPTDEELVGF YLKRKIQQKP LSIELIRQLD IYKYDPWDLP  60
KLASTGEKEW YFYCPRDRKY RNSARPNRVT VAGFWKATGT DRPIYSSEGT KCIGLKKSLV  120
FYKGRAAKGI KTDWMMHEYR MPSLSDPSIP KTPKDKSIPA NDAWSICRIF KKPSSVAQRV  180
SSHSWGPQSI ATTTPELLSA LQSIQASHFA LESSSCSANQ FNSQQCFQGR QQQKLNSSQD  240
GSSCKVINFN RSLSLPQLSE KDTHSSPIIL PFETQSLEKS SAVTSVLLSM APEIVSSMNE  300
ALPNTEMEQL EPSYGYTDDW GIDANGAIGD KDDDPYTRKP VHVHSSGTEC GIPRKIKFPF  360
DLGVDSPDDW TSSIPCDSLP CPPPPTEMSN SSSTEKYYA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-52	14	178	17	171	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-52	14	178	17	171	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-52	14	178	17	171	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-52	14	178	17	171	NO APICAL MERISTEM PROTEIN
3swm_A	2e-52	14	178	20	174	NAC domain-containing protein 19
3swm_B	2e-52	14	178	20	174	NAC domain-containing protein 19
3swm_C	2e-52	14	178	20	174	NAC domain-containing protein 19
3swm_D	2e-52	14	178	20	174	NAC domain-containing protein 19
3swp_A	2e-52	14	178	20	174	NAC domain-containing protein 19
3swp_B	2e-52	14	178	20	174	NAC domain-containing protein 19
3swp_C	2e-52	14	178	20	174	NAC domain-containing protein 19
3swp_D	2e-52	14	178	20	174	NAC domain-containing protein 19
4dul_A	1e-52	14	178	17	171	NAC domain-containing protein 19
4dul_B	1e-52	14	178	17	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269\|PubMed:19081078}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.2G203800.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269\|PubMed:19081078}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP005397	2e-35	AP005397.2 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0643D11.
GenBank	AP014965	2e-35	AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004956807.1	0.0	putative NAC domain-containing protein 94
Swissprot	Q9ZVH0	6e-95	FEZ_ARATH; Protein FEZ
TrEMBL	A0A368Q1D6	0.0	A0A368Q1D6_SETIT; Uncharacterized protein
STRING	Si032144m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3366	38	82

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26870.1	4e-97	NAC family protein

Link Out ? help Back to Top
Phytozome	Seita.2G203800.1.p

Publications ? help Back to Top
Bennett T,van den Toorn A,Willemsen V,Scheres B Precise control of plant stem cell activity through parallel regulatory inputs. Development, 2014. 141(21): p. 4055-64 [PMID:25256342]