PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.2G202100.1.p
Common NameLOC101769272, SETIT_030496mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 329aa    MW: 34210.4 Da    PI: 6.7184
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.2G202100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH438e-14115161354
                         HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         r+h+e+ErrRR+riN  +++Lr+llP+      +K +Ka+ L ++ +++k+L
  Seita.2G202100.1.p 115 RSHSEAERRRRQRINGHLARLRSLLPNT-----TKTDKASLLAEVLDHVKEL 161
                         78*************************9.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.628112161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.22E-12115164No hitNo description
SuperFamilySSF474592.09E-14115169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-11115161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.3E-14116168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.5E-13118167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2602.2E-5215264No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MWDGGVEHGS QQEAAPHQLL PWLGAAPFSS EQAVAGLGAM GAYACDGVGA VGGLGHGGVF  60
GFGFDAVQQQ QQQRAAEGGG GGKAVVSGLL GSLQAELGRM TAREMMDAKA LAASRSHSEA  120
ERRRRQRING HLARLRSLLP NTTKTDKASL LAEVLDHVKE LKRQTSAMMV AAAAASVAGD  180
DDEGAGPAQL LPTEADELAV DAAADRAGRL VVRASLCCED RPDLIPDIVR ALAALRMRAR  240
RAEITTLGGR VRSVLLITAV EGADDKGDDD GRAASHRRHE CIASVQEALR GVMDRRTADS  300
DTSSTGGGGG GSIKRQRMNY AAQEQCSV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.2G202100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9711890.0EU971189.1 Zea mays clone 359116 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004956791.10.0transcription factor bHLH30
SwissprotQ9S7Y14e-65BH030_ARATH; Transcription factor bHLH30
TrEMBLK3ZV650.0K3ZV65_SETIT; Uncharacterized protein
STRINGSi030496m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19183898
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.12e-38bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ohashi-Ito K, et al.
    A bHLH complex activates vascular cell division via cytokinin action in root apical meristem.
    Curr. Biol., 2014. 24(17): p. 2053-8
    [PMID:25131670]
  3. Katayama H, et al.
    A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem.
    Curr. Biol., 2015. 25(23): p. 3144-50
    [PMID:26616019]