PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Seita.2G202000.1.p

Common Name

LOC101768856, SETIT_033183mg

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

TCP

Protein Properties

Length: 267aa MW: 28268.2 Da PI: 6.122

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.2G202000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	111.6	1.1e-34	103	174	3	66
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt........s 66 ++drhski T++g RdRR+Rls+++a+ fF+Lqd+LGfdk+skt++WLl+q+kpai+ lt+ + Seita.2G202000.1.p 103 FRTDRHSKIRTAQGVRDRRMRLSLDVARDFFALQDRLGFDKASKTVDWLLTQSKPAIDRLTEPsqrtggggG 174 689**********************************************************98444444431 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	34.922	104	162	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	3.1E-33	104	167	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 267 aa Download sequence Send to blast
MLPYPNLHHF GVSQEPPHPN PTGFPIMLPP AAHLDQHYAD HFFPSHAHQF NSETLEAVLR 60 PPRAAPGCEA AVTAPQGGGR NGAAAAAAGG GGQGHARARK RPFRTDRHSK IRTAQGVRDR 120 RMRLSLDVAR DFFALQDRLG FDKASKTVDW LLTQSKPAID RLTEPSQRTG GGGGVDAACL 180 SSPTSGAPDG SGKRGGVAEK AGARNGGSAF MEHGCELDRL VSAAPVLGEY YYAGLSEMMS 240 NNGGEEGDDD GEYEEDGDDF LDGMQY*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.2G202000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004956790.1	0.0	transcription factor TB1
TrEMBL	K4A2T1	0.0	K4A2T1_SETIT; Uncharacterized protein
STRING	Si033183m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4052	31	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18550.1	2e-27	TCP family protein

Link Out ? help Back to Top
Phytozome	Seita.2G202000.1.p
Entrez Gene	101768856