PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.2G185700.1.p
Common NameLOC101770239, SETIT_030284mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family NAC
Protein Properties Length: 360aa    MW: 39767 Da    PI: 9.0119
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.2G185700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM166.78e-52251571128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                         lppGfrFhP+dee++++yL++kv ++++++  +i ev+++++ePw+Lp k+k  +ekewyfF ++d+ky+tg r+nrat++gyWkatgkdk
  Seita.2G185700.1.p  25 LPPGFRFHPSDEEIITFYLTPKVLQRSFTC-VAIGEVNLNRTEPWELPVKAKMgREKEWYFFYQKDRKYPTGMRANRATEAGYWKATGKDK 114
                         79*************************999.67***************544442778********************************** PP

                 NAM  91 evlskkgel.....vglkktLvfykgrapkgektdWvmheyrl 128
                         e++ +k  +     +g+kktLvfykgrap+gekt+Wvmhe+rl
  Seita.2G185700.1.p 115 EIYGTKVGVplpvlIGMKKTLVFYKGRAPRGEKTNWVMHEFRL 157
                         ***97444367777***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.83E-5819195IPR003441NAC domain
PROSITE profilePS5100556.05625194IPR003441NAC domain
PfamPF023653.9E-2726157IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MKKCLHIKRT MGDHHMQQPD GNLELPPGFR FHPSDEEIIT FYLTPKVLQR SFTCVAIGEV  60
NLNRTEPWEL PVKAKMGREK EWYFFYQKDR KYPTGMRANR ATEAGYWKAT GKDKEIYGTK  120
VGVPLPVLIG MKKTLVFYKG RAPRGEKTNW VMHEFRLQHS SKLPCPTSSS NSDATMESPL  180
LSKDDWVVCR VFHKNTGIKK ASVPTPSLYD MAMTSGGMEQ SSITMPMPMQ FPIPPAFTMD  240
PVASYYSTAG ASSSSVPPLM PPMAGMGSAG LQMNDTLFGD PMAHLPPMSF YHQMGVGALG  300
AASFMATPPS LPMVSQKDVG LNNPDHVNTV ELSSTVSTAP ESMATMDDVD GLWKQVLKK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A7e-471920011171NO APICAL MERISTEM PROTEIN
1ut4_B7e-471920011171NO APICAL MERISTEM PROTEIN
1ut7_A7e-471920011171NO APICAL MERISTEM PROTEIN
1ut7_B7e-471920011171NO APICAL MERISTEM PROTEIN
3swm_A7e-471920014174NAC domain-containing protein 19
3swm_B7e-471920014174NAC domain-containing protein 19
3swm_C7e-471920014174NAC domain-containing protein 19
3swm_D7e-471920014174NAC domain-containing protein 19
3swp_A7e-471920014174NAC domain-containing protein 19
3swp_B7e-471920014174NAC domain-containing protein 19
3swp_C7e-471920014174NAC domain-containing protein 19
3swp_D7e-471920014174NAC domain-containing protein 19
4dul_A7e-471920011171NAC domain-containing protein 19
4dul_B7e-471920011171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.2G185700.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}.
UniProtINDUCTION: Repressed post-transcriptionally by miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808, ECO:0000269|PubMed:18305205, ECO:0000305|PubMed:15723790}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022679478.10.0protein CUP-SHAPED COTYLEDON 1
SwissprotQ9FLJ27e-72NC100_ARATH; NAC domain-containing protein 100
SwissprotQ9FLR37e-72NAC79_ARATH; NAC domain-containing protein 79
TrEMBLK3ZUK30.0K3ZUK3_SETIT; Uncharacterized protein
STRINGSi030284m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP145237121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61430.18e-74NAC domain containing protein 100
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Vidal EA,Álvarez JM,Gutiérrez RA
    Nitrate regulation of AFB3 and NAC4 gene expression in Arabidopsis roots depends on NRT1.1 nitrate transport function.
    Plant Signal Behav, 2014. 9(3): p. e28501
    [PMID:24642706]
  4. Lee MH,Jeon HS,Kim HG,Park OK
    An Arabidopsis NAC transcription factor NAC4 promotes pathogen-induced cell death under negative regulation by microRNA164.
    New Phytol., 2017. 214(1): p. 343-360
    [PMID:28032643]