PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.2G175000.2.p | ||||||||
Common Name | LOC101780340, SETIT_030034mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | DBB | ||||||||
Protein Properties | Length: 292aa MW: 30961.1 Da PI: 4.1128 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 19.9 | 1.5e-06 | 4 | 45 | 5 | 40 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 C+ ++ ++ +C+++ lC +C + H+ Ht++ Seita.2G175000.2.p 4 LCDFCGAQRSMVYCRSDAASLCLSCDRNVHSAnalsrrHTRT 45 6*****************************657888889876 PP | |||||||
2 | zf-B_box | 24.9 | 4.2e-08 | 47 | 89 | 5 | 41 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 C+++ ++++ C + lC++C ++H+ H++++ Seita.2G175000.2.p 47 LCDRCASQPAMVRCLVENASLCQNCDWNGHSAgsstagHKRQT 89 7*****************************6688899999876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.926 | 1 | 47 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 2.4E-10 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 3.05E-7 | 4 | 47 | No hit | No description |
PROSITE profile | PS50119 | 8.83 | 43 | 90 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.11E-5 | 47 | 90 | No hit | No description |
Pfam | PF00643 | 1.4E-5 | 47 | 90 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 0.26 | 48 | 90 | IPR000315 | B-box-type zinc finger |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 292 aa Download sequence Send to blast |
MGALCDFCGA QRSMVYCRSD AASLCLSCDR NVHSANALSR RHTRTLLCDR CASQPAMVRC 60 LVENASLCQN CDWNGHSAGS STAGHKRQTI NCYSGCPSSA ELSRIWSFVS DIPNVAPEPN 120 CEQGISMMSI SDSGVSNQDN AAGDNNLLDM ASATLMSDLD TCDKPLVGSS SGAGVNLLPL 180 ATDQAAGSVD STTPKVPYTP DKDMFSKDSI YEDFCVDDVD LAFENYEELF GTSHIQTEQL 240 FDDAGIDSYF EVNEVPAGNS TEQPKLVQPA NSNAVSADSG MSNPGVKGSW P* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.2G175000.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU962767 | 0.0 | EU962767.1 Zea mays clone 245350 CCT motif family protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004956568.1 | 0.0 | zinc finger protein CONSTANS-LIKE 9 isoform X1 | ||||
TrEMBL | A0A368Q083 | 0.0 | A0A368Q083_SETIT; Uncharacterized protein | ||||
STRING | Si030034m | 0.0 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48250.1 | 3e-78 | B-box type zinc finger protein with CCT domain |
Link Out ? help Back to Top | |
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Phytozome | Seita.2G175000.2.p |
Entrez Gene | 101780340 |