PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.2G172500.1.p | ||||||||
Common Name | LOC101770890, SETIT_030741mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | ERF | ||||||||
Protein Properties | Length: 281aa MW: 30922 Da PI: 4.5765 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 52 | 1.8e-16 | 72 | 122 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+++GVr ++ +grW+AeIrd + r +r ++g+++++e Aa+a+ a++++++ Seita.2G172500.1.p 72 SRFRGVRKRP-WGRWAAEIRDpV-----RkTRKWIGSYDSEEAAAAAYQAYANQIHA 122 789*******.**********44.....55**********9999********99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.8E-10 | 72 | 122 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.6E-15 | 72 | 122 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.84E-15 | 72 | 107 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.4E-18 | 73 | 120 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.7E-13 | 73 | 137 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.36 | 73 | 130 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.8E-7 | 74 | 85 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.8E-7 | 96 | 112 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 281 aa Download sequence Send to blast |
MMPCMQKVRI FCSDPDATDS SDDEDGQNIK VKKMVREVLV PVKNSKTSKC LETLVPCGTK 60 DLEVSAKKGK SSRFRGVRKR PWGRWAAEIR DPVRKTRKWI GSYDSEEAAA AAYQAYANQI 120 HAEVLAKKAQ ESVSERAALS SSSSVSCVSS SAPCEQTARV QKGVFMEIDP EPVDEILLNF 180 STPKEISVDV LLGRIDETPV GDSVSLADEL PLDDFTRLED AFPISDFIGA VHKPLDDDYI 240 GLADISHLPL PMKDPAFNLD AELDWSGFDF TAIEHELQVL * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.2G172500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004956545.1 | 0.0 | ethylene-responsive transcription factor ERF021 | ||||
Refseq | XP_004956547.1 | 0.0 | ethylene-responsive transcription factor ERF021 | ||||
Refseq | XP_022679717.1 | 0.0 | ethylene-responsive transcription factor ERF021 | ||||
TrEMBL | K3ZVW0 | 0.0 | K3ZVW0_SETIT; Uncharacterized protein | ||||
STRING | Si030741m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5020 | 37 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28370.1 | 1e-14 | ERF domain protein 11 |
Link Out ? help Back to Top | |
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Phytozome | Seita.2G172500.1.p |
Entrez Gene | 101770890 |