PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.2G158000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | GATA | ||||||||
Protein Properties | Length: 546aa MW: 59642 Da PI: 7.1249 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 50.8 | 2.2e-16 | 7 | 41 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cg+t+TplWR+gp ++ LCnaCG ++r kg+ Seita.2G158000.1.p 7 CRHCGVTSTPLWRNGPPDKPVLCNACGSRWRTKGS 41 ****************55555***********997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 2.0E-10 | 1 | 53 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 3.85E-11 | 5 | 46 | No hit | No description |
CDD | cd00202 | 3.76E-15 | 6 | 40 | No hit | No description |
PROSITE profile | PS50114 | 11.345 | 7 | 40 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 1.1E-12 | 7 | 41 | IPR013088 | Zinc finger, NHR/GATA-type |
Pfam | PF00320 | 3.4E-14 | 7 | 41 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF13919 | 1.4E-9 | 272 | 366 | IPR028020 | ASX homology domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 546 aa Download sequence Send to blast |
MGKQGPCRHC GVTSTPLWRN GPPDKPVLCN ACGSRWRTKG SLANYTPMHR KDYIDDNEPR 60 VSKLKPPTSK SKSQKKKPNH IIMDNGPFSC QNFQKMGDAD PSNRSSSGSA VSYSESCGPY 120 GAADASEMTG SAQSHAWEFL VPSRKRSCVT RPKPSPVEML AKDLSSIMHE EQLYYLSGSS 180 EEDLLYHSET PVGSFEIGSG SVLLRHPNSK SPEEESEASS IPADNKSYIT SESYSGSASF 240 VVHSGNRAIN LNPATARLKR SPLHIEDNAR RDKLPYENKH ILESIDSPLV SVDLEDVVNY 300 SNFVKYLTKE DQQQLFKLLS PAESSTPDSS VRSMFDSIQF SDAIDSYQML LGEGILDPSF 360 SGDEGWNTVK MLALTNLTRC KWLECYKQQK EKEIKAIGGV ENISGSKGST KFTMKPLKRS 420 RDTHIQSETE LEGTMRTPKR VLKSGDLASQ FKSSSMLKSG YATKGSTCTG GALSLFMLPP 480 EKLSLLVPPQ YGNGDSDQDL LLDIPLNARH AEAELLCQPS QLSSITHSST SVDGVAGGEG 540 CLKQP* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.2G158000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012699094.1 | 0.0 | uncharacterized protein LOC101755887 | ||||
TrEMBL | A0A368Q042 | 0.0 | A0A368Q042_SETIT; Uncharacterized protein | ||||
STRING | Si029600m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4424 | 34 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17570.3 | 2e-90 | GATA transcription factor 26 |
Link Out ? help Back to Top | |
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Phytozome | Seita.2G158000.1.p |