PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.2G138700.1.p
Common NameLOC101782482, SETIT_030544mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family MYB
Protein Properties Length: 322aa    MW: 34388.4 Da    PI: 7.0956
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.2G138700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.65e-171462148
                        TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                        +g+W++eEd +l+++++++G+g +W + +++ g++R++k+c++rw++yl
  Seita.2G138700.1.p 14 KGPWSPEEDIKLKEYIHKHGTGgNWIALPHKAGLKRCGKSCRLRWLNYL 62
                        79*********************************************97 PP
2Myb_DNA-binding38.62.5e-1269111246
                         SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         g ++ +Ed ++ ++++  G++ W+ Ia+ ++ gRt++++k++w++
  Seita.2G138700.1.p  69 GDFSDDEDRIICNLFATIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                         679******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.27962IPR017930Myb domain
SuperFamilySSF466899.77E-2712109IPR009057Homeodomain-like
SMARTSM007175.8E-131364IPR001005SANT/Myb domain
PfamPF002492.6E-161462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.7E-241569IPR009057Homeodomain-like
CDDcd001673.06E-101662No hitNo description
PROSITE profilePS5129421.79363117IPR017930Myb domain
SMARTSM007171.0E-1167115IPR001005SANT/Myb domain
PfamPF002494.8E-1169111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.0E-2370118IPR009057Homeodomain-like
CDDcd001671.65E-871113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MGRAPCCDKA TVKKGPWSPE EDIKLKEYIH KHGTGGNWIA LPHKAGLKRC GKSCRLRWLN  60
YLRPNIKHGD FSDDEDRIIC NLFATIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLMHG  120
VQPYTTHMHN HCSSMKQQQL LFLTASAPAA PPEAACPLSL QHLSSPHDYS HHYISSYGSC  180
NSSTSLLSAA AAAGSHGGLL NGEHQTMSTS CLDSDGGLGL YFDELCATVT TSSGVHGQGL  240
GMESFILGGF QLQEDHHKAM LVAGAGAGAA NQLNQQYSAA TSGCYDDEAK PLVSVTGGGD  300
GAGGTSSMFF YGSSYSNDDE S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-25141177108B-MYB
1gv2_A7e-26141174105MYB PROTO-ONCOGENE PROTEIN
1mse_C7e-26141174105C-Myb DNA-Binding Domain
1msf_C7e-26141174105C-Myb DNA-Binding Domain
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.2G138700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004956269.10.0myb-related protein Hv1
TrEMBLK3ZVB30.0K3ZVB3_SETIT; Uncharacterized protein
STRINGSi030544m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.16e-76myb domain protein 36