PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.2G134700.1.p
Common NameSETIT_028957mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family BES1
Protein Properties Length: 811aa    MW: 89499.2 Da    PI: 6.6396
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.2G134700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822121.61e-371833084125
              DUF822   4 grkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl....eeaeaagssasasp 90 
                          r++  +E+E++k+RER+RRai+ +i+aGLR++Gny l++raD+neV++AL+reAGwvv +DGtt++ +         ++ ++ +   a p
  Seita.2G134700.1.p 183 SRRRAREEKERTKLRERQRRAITGRILAGLRQHGNYSLRARADINEVIAALAREAGWVVLPDGTTFPSSAAAAaqpgPRPVMVAAAPLALP 273
                         6889999************************************************************655433222255666666666666 PP

              DUF822  91 esslq.sslkssalaspvesysaspksssfpspssl 125
                         +s+   ++  s   a p+ s ++ p+ss  +sp ++
  Seita.2G134700.1.p 274 TSPALpLRGISPVAARPI-SHRPAPASSLLLSPPRA 308
                         666653333333333333.44566666666666655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056872.5E-36183313IPR008540BES1/BZR1 plant transcription factor, N-terminal
SuperFamilySSF514454.92E-190367805IPR017853Glycoside hydrolase superfamily
Gene3DG3DSA:3.20.20.803.5E-207370804IPR013781Glycoside hydrolase, catalytic domain
PfamPF013734.1E-115376793IPR001554Glycoside hydrolase, family 14
PRINTSPR007506.4E-77407421IPR001554Glycoside hydrolase, family 14
PRINTSPR007506.4E-77428446IPR001554Glycoside hydrolase, family 14
PRINTSPR007506.4E-77450471IPR001554Glycoside hydrolase, family 14
PROSITE patternPS005060454462IPR018238Glycoside hydrolase, family 14, conserved site
PRINTSPR008427.5E-7533542IPR001371Glycoside hydrolase, family 14B, plant
PRINTSPR007506.4E-77543565IPR001554Glycoside hydrolase, family 14
PRINTSPR007506.4E-77616635IPR001554Glycoside hydrolase, family 14
PRINTSPR007506.4E-77650666IPR001554Glycoside hydrolase, family 14
PRINTSPR007506.4E-77667678IPR001554Glycoside hydrolase, family 14
PRINTSPR007506.4E-77685708IPR001554Glycoside hydrolase, family 14
PRINTSPR008427.5E-7688698IPR001371Glycoside hydrolase, family 14B, plant
PRINTSPR007506.4E-77725747IPR001554Glycoside hydrolase, family 14
PRINTSPR008427.5E-7776790IPR001371Glycoside hydrolase, family 14B, plant
PRINTSPR008427.5E-7791805IPR001371Glycoside hydrolase, family 14B, plant
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000272Biological Processpolysaccharide catabolic process
GO:0048831Biological Processregulation of shoot system development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0016161Molecular Functionbeta-amylase activity
Sequence ? help Back to Top
Protein Sequence    Length: 811 aa     Download sequence    Send to blast
MGVGKGRGAC EHVCVRPWPL GTGREAPNHM RPMCGANPPP RPARPFRDGG EGEEATRRRS  60
QACAPPGHRG RPSLHTCRPR AATVPTISLQ ARRRTPRTRE RPRWSPPLVP LPCISLPPFP  120
RGARSGMQQA AGPAEDEDEE MGVKEEDGDE EEEEEDDGYY MDPCPAAVAS PPGVGGGRAN  180
PASRRRAREE KERTKLRERQ RRAITGRILA GLRQHGNYSL RARADINEVI AALAREAGWV  240
VLPDGTTFPS SAAAAAQPGP RPVMVAAAPL ALPTSPALPL RGISPVAARP ISHRPAPASS  300
LLLSPPRAAG AAAASSRPPA DDVPDGGSSS HLLAVPVNVP MDPAVAEDAA VAKQVPEVAP  360
RPPERDFAGT PYVPVYVMLP LGVVNVSGEV VDADELVGQL RVLKAAGVDG VMVDCWWGNV  420
EAHRPQEYNW TGYKRLFQMI RELKLKLQVV MSFHECGGNV GDDVSIPLPH WVTEIGRSNP  480
DIYFTDRAGR RNTECLSWGI DKERVLQGRT AVEVYFDFMR SFRVEFDEYF EDAIISEIEI  540
GLGACGELRY PSYPAKHGWK YPGIGEFQCY DRYLQKNLRR AAEERGHTIW ARGPDNAGHY  600
NSEPNLTGFF CDGGDYDSYY GRFFLNWYSQ MLVDHADRVL MLARLAFEGL NIAVKVSGVH  660
WWYKTASHAA ELTAGFYNPC NRDGYAPIAA VLKKYDAALN FTCVELRTMD QHEVYPEAFA  720
DPEGLVWQVL NAAWDAGLQV ASENALPCYD REGFNKILEN AKPLNDPDGR HLFGFTYLRL  780
SKVLFERPNF FEFERFVKRM HGEAVLDLQA *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1bfn_A1e-15937280311444BETA-AMYLASE
1bya_A1e-15937280311444BETA-AMYLASE
1byb_A1e-15937280311444BETA-AMYLASE
1byc_A1e-15937280311444BETA-AMYLASE
1byd_A1e-15937280311444BETA-AMYLASE
1q6c_A1e-15937280311444beta-amylase
1wdp_A1e-15937280311444Beta-amylase
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.2G134700.1.p
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9569050.0EU956905.1 Zea mays clone 1577050 beta-amylase mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012699441.20.0beta-amylase 2, chloroplastic
SwissprotO808310.0BAM7_ARATH; Beta-amylase 7
TrEMBLK3ZQS70.0K3ZQS7_SETIT; Beta-amylase
STRINGSi028957m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21413663
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45880.10.0beta-amylase 7
Publications ? help Back to Top
  1. Soyk S, et al.
    The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation.
    Plant Cell, 2014. 26(4): p. 1746-1763
    [PMID:24748042]