PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Seita.2G133600.1.p | ||||||||
Common Name | LOC101760620, SETIT_031288mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
||||||||
Family | NF-YB | ||||||||
Protein Properties | Length: 174aa MW: 19203.4 Da PI: 4.7299 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 51.8 | 1.9e-16 | 38 | 137 | 6 | 97 |
NF-YB 6 rflPianvsrimkkvlP........anakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylk 88 ++lP a v r++k l a+ + kda e + fi ++++ a+d c++ kr+tin+dd+l al ++ f ++vepl++ l+ Seita.2G133600.1.p 38 EELPKAIVRRLVKDKLAhiagggegAEVIVNKDAMAAFAESARIFIHYLSATANDMCKESKRQTINADDVLNALDEMDFPEFVEPLRTSLQ 128 57888999999998886222222112345889999******************************************************** PP NF-YB 89 kyrelegek 97 ++r+ ++++ Seita.2G133600.1.p 129 EFRNKNADR 137 ***998876 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 1.8E-33 | 33 | 171 | IPR009072 | Histone-fold |
Pfam | PF00808 | 3.2E-9 | 39 | 111 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
SuperFamily | SSF47113 | 1.17E-26 | 40 | 163 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 174 aa Download sequence Send to blast |
MARKRTKEAE PQPAAAAQEE PAPAPAAPAA AMTEAEVEEL PKAIVRRLVK DKLAHIAGGG 60 EGAEVIVNKD AMAAFAESAR IFIHYLSATA NDMCKESKRQ TINADDVLNA LDEMDFPEFV 120 EPLRTSLQEF RNKNADRRSE ANKKQKEKRR KLNEEPHPQN ENDPVDDAKE DDD* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5y26_A | 6e-11 | 40 | 130 | 18 | 100 | DNA polymerase epsilon subunit D |
5y27_A | 6e-11 | 40 | 130 | 18 | 100 | DNA polymerase epsilon subunit D |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 136 | 151 | RRSEANKKQKEKRRKL |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Seita.2G133600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT060559 | 1e-167 | BT060559.1 Zea mays full-length cDNA clone ZM_BFb0015O22 mRNA, complete cds. | |||
GenBank | EU962697 | 1e-167 | EU962697.1 Zea mays clone 244791 DNA polymerase epsilon subunit 3 mRNA, complete cds. | |||
GenBank | EU964046 | 1e-167 | EU964046.1 Zea mays clone 275447 DNA polymerase epsilon subunit 3 mRNA, complete cds. | |||
GenBank | KJ728301 | 1e-167 | KJ728301.1 Zea mays clone pUT6581 CCAAT-DR1 transcription factor (CADR16) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004956211.1 | 1e-121 | DNA polymerase epsilon subunit 3 | ||||
TrEMBL | K3ZXF6 | 1e-120 | K3ZXF6_SETIT; Uncharacterized protein | ||||
STRING | Si031288m | 1e-121 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10414 | 37 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G27470.1 | 4e-34 | nuclear factor Y, subunit B11 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Seita.2G133600.1.p |
Entrez Gene | 101760620 |