PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Seita.2G131900.1.p

Common Name

SETIT_028783mg

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

C2H2

Protein Properties

Length: 1054aa MW: 112947 Da PI: 6.9558

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.2G131900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.8	0.00018	906	924	1	19
EEETTTTEEESSHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrH 19 y+C+ Cg++Fs ++L++H Seita.2G131900.1.p 906 YQCKTCGERFSLEEELRSH 924 9****************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51391	36.346	62	190	IPR006569	CID domain
Gene3D	G3DSA:1.25.40.90	5.5E-43	64	193	IPR008942	ENTH/VHS
SuperFamily	SSF48464	2.15E-38	65	183	IPR008942	ENTH/VHS
SMART	SM00582	1.9E-42	65	187	IPR006569	CID domain
CDD	cd03562	1.89E-41	69	176	No hit	No description
Pfam	PF04818	1.1E-9	118	171	IPR006903	RNA polymerase II-binding domain
PROSITE profile	PS50157	9.39	906	935	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1054 aa Download sequence Send to blast
MRASASAAPM EASAASRRSA PGPDPGVAKK PRLAQPPPRD PRSSSYAAAS NGAAASAAEQ 60 ALVDELLGQY RTALGELTFN SKPIITNLTI IAGENLQAAK PIAALICANI LEVPSEQKLP 120 SLYLLDSIVK NIGKDYVKHF SSRLPEVFCK AYKQVDPSIH HSMRHLFGTW KGVFPPHPLQ 180 MIEKDLGFQS SANGSSSATP SRPESQSPRP SNSIHVNPKY LEARQQLNQP TKGILGSGAK 240 TAVIADAGND IERANRLGTD RSAGRRLDAP NARPNIQRTQ RDPFSNPVNE KQAGRDVRGL 300 GFSNISQQAV VGTGQVRSKS KGQDGIGGPY YATGVGSSEE QFDRRSNFYA SKDVRPSGPV 360 RLDSALLPTP SIDPDRIGRP SSNKSWKHSE EEEYVWDDVH SQAADYGSNS TVRKGEWMVD 420 DGNAKFASLQ RAKWAEGGAV EHLDPRFGLA TGQDRRLAAY MDHEEYIHGK HEVGPRIDRE 480 IRPDGQQLPA PRSSSLWASQ ENTHPDIGLD PRISRFSNQP GERSTIYTGT MSASITSSVP 540 VGLSGPYAGR SSLDSANSVP IRSTETFGQQ KHRYWSSSPP PAHSPSSTAP FVRQSSPNPA 600 EPDFYPSRSF SQLGQNPQEE YSLRAAALAK DSHFMSHNAG LPQGQPSLLA TQQGQKYATL 660 QPKSHIKPTD QVQASFSREN SPSLSRPSIQ LGEVSLPSDP TPITSDLTSA SNLLAGLIKS 720 GFKPNNPSDL ASLRAQPLVP SGPLPRTLPS PPVASSSLQN AAGENTTLQT QAPNTARPPL 780 PPGLPPPPTQ SAGIAAPLSS LLSSLVAKGL ISSPATDSSA AGPSQPNKAS SANATDVAAS 840 AMPMPAQKPS VGKETSNSDS SAPTNTLLPK VIKIKTGDLI GLEFKQEILR ECHEHVISSL 900 FGDQNYQCKT CGERFSLEEE LRSHAPCPVS RESKSYAGIA PKKWYPSKNS YIDGSHEIED 960 SAEASDADLG SAEEVCEFMV PADESQIICA LCGEPFDDIY SVEKGDWMYK DAVFLDYPKR 1020 EGSCGSNVEG EEHVPIVHVR CMPRGSNNGM EVD*

Sequence ? help Back to Top

Protein Sequence Length: 1054 aa Download sequence Send to blast

MRASASAAPM EASAASRRSA PGPDPGVAKK PRLAQPPPRD PRSSSYAAAS NGAAASAAEQ  60
ALVDELLGQY RTALGELTFN SKPIITNLTI IAGENLQAAK PIAALICANI LEVPSEQKLP  120
SLYLLDSIVK NIGKDYVKHF SSRLPEVFCK AYKQVDPSIH HSMRHLFGTW KGVFPPHPLQ  180
MIEKDLGFQS SANGSSSATP SRPESQSPRP SNSIHVNPKY LEARQQLNQP TKGILGSGAK  240
TAVIADAGND IERANRLGTD RSAGRRLDAP NARPNIQRTQ RDPFSNPVNE KQAGRDVRGL  300
GFSNISQQAV VGTGQVRSKS KGQDGIGGPY YATGVGSSEE QFDRRSNFYA SKDVRPSGPV  360
RLDSALLPTP SIDPDRIGRP SSNKSWKHSE EEEYVWDDVH SQAADYGSNS TVRKGEWMVD  420
DGNAKFASLQ RAKWAEGGAV EHLDPRFGLA TGQDRRLAAY MDHEEYIHGK HEVGPRIDRE  480
IRPDGQQLPA PRSSSLWASQ ENTHPDIGLD PRISRFSNQP GERSTIYTGT MSASITSSVP  540
VGLSGPYAGR SSLDSANSVP IRSTETFGQQ KHRYWSSSPP PAHSPSSTAP FVRQSSPNPA  600
EPDFYPSRSF SQLGQNPQEE YSLRAAALAK DSHFMSHNAG LPQGQPSLLA TQQGQKYATL  660
QPKSHIKPTD QVQASFSREN SPSLSRPSIQ LGEVSLPSDP TPITSDLTSA SNLLAGLIKS  720
GFKPNNPSDL ASLRAQPLVP SGPLPRTLPS PPVASSSLQN AAGENTTLQT QAPNTARPPL  780
PPGLPPPPTQ SAGIAAPLSS LLSSLVAKGL ISSPATDSSA AGPSQPNKAS SANATDVAAS  840
AMPMPAQKPS VGKETSNSDS SAPTNTLLPK VIKIKTGDLI GLEFKQEILR ECHEHVISSL  900
FGDQNYQCKT CGERFSLEEE LRSHAPCPVS RESKSYAGIA PKKWYPSKNS YIDGSHEIED  960
SAEASDADLG SAEEVCEFMV PADESQIICA LCGEPFDDIY SVEKGDWMYK DAVFLDYPKR  1020
EGSCGSNVEG EEHVPIVHVR CMPRGSNNGM EVD*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1sz9_A	2e-14	66	170	8	112	PCF11 protein
1sz9_B	2e-14	66	170	8	112	PCF11 protein
1sz9_C	2e-14	66	170	8	112	PCF11 protein
1sza_A	2e-14	66	170	8	112	PCF11 protein
1sza_B	2e-14	66	170	8	112	PCF11 protein
1sza_C	2e-14	66	170	8	112	PCF11 protein
2bf0_X	2e-14	66	170	13	117	PCF11
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.2G131900.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012699069.1	0.0	uncharacterized protein LOC101754395
TrEMBL	K3ZQA3	0.0	K3ZQA3_SETIT; Uncharacterized protein
STRING	Si028783m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7261	7	8

Link Out ? help Back to Top
Phytozome	Seita.2G131900.1.p