PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.2G126100.1.p
Common NameSETIT_032748mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family WRKY
Protein Properties Length: 159aa    MW: 17046.6 Da    PI: 8.8711
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.2G126100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY361.4e-116452159
                        -EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY 21 prsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59
                         rs ++C  + gCp++k+v++s+ dp+ +eitY + H+++
  Seita.2G126100.1.p  6 RRSHFKCGRKsGCPARKQVQQSDADPSKLEITYFDAHTCD 45
                        59******999***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007743.0E-6546IPR003657WRKY domain
SuperFamilySSF1182901.23E-10547IPR003657WRKY domain
PfamPF031063.6E-11545IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.6E-11647IPR003657WRKY domain
PROSITE profilePS5081111.795747IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MSCCSRRSHF KCGRKSGCPA RKQVQQSDAD PSKLEITYFD AHTCDNPPPS SSQVVPDPRI  60
ISSGTQRNTV QLVPVAAVPS AQRYVARPSP LPHPVADMMP RTTGVLLPVI AVAPAALSEQ  120
AELLFIPSPA CSQSELLPTE VARLNRTVHR VRMHDGGT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.2G126100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A368PXZ01e-110A0A368PXZ0_SETIT; Uncharacterized protein
STRINGSi032748m1e-106(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141862125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58710.12e-07WRKY DNA-binding protein 69