PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.2G115700.1.p
Common NameLOC105913743, SETIT_032543mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family M-type_MADS
Protein Properties Length: 111aa    MW: 11964.4 Da    PI: 4.4865
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.2G115700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF28.61.9e-09444949
                        HHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
              SRF-TF  9 rqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                         q++fs R n+++  A+ LS   +a v vi+fs+tg+ + y
  Seita.2G115700.1.p  4 SQTSFSERTNTLFSMAKDLSQEVGAHVTVIVFSPTGEPKAY 44
                        69**********************************97666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500669.811148IPR002100Transcription factor, MADS-box
PfamPF003193.9E-10544IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.09E-10571IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 111 aa     Download sequence    Send to blast
MAQSQTSFSE RTNTLFSMAK DLSQEVGAHV TVIVFSPTGE PKAYGAPIAN SILRTYLPEI  60
HSSPSPACYE TAEEAAARVD GMKWEVEETA FLAEAERVRQ AVAWSNILTA *
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.2G115700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012699057.12e-76uncharacterized protein LOC105913743
TrEMBLK4A1025e-75K4A102_SETIT; Uncharacterized protein
STRINGSi032543m8e-76(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7989512
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.13e-10AGAMOUS-like 29