PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.2G114000.1.p
Common NameSETIT_032393mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family HD-ZIP
Protein Properties Length: 713aa    MW: 78529.7 Da    PI: 6.6227
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.2G114000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.69.2e-1863117357
                         --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
            Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                         kR ++t++q++eL +++  + +p+ae+ e L +k+gL+ ++VkvWFqNrR ++kk
  Seita.2G114000.1.p  63 KRKRLTPQQTQELMAVYGTCTHPDAEKLEALGTKIGLEPCRVKVWFQNRRPQMKK 117
                         7999**********************************************99997 PP
2START123.13.6e-392184374205
                         HHHHHHHHHHHHHC-TT-EEEE..EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S..EEEEE.. CS
               START   4 eeaaqelvkkalaeepgWvkss..esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla..kaetl.. 82 
                          + +++++ +a+ +ep+W      e++n+++  +   +  +      + +ea r++++v +++++lv +l+d++ +W+et++   a+++  
  Seita.2G114000.1.p 218 DTSMEQFLVLATKGEPMWLPTTdsEMLNYEYGARMS-PCLFglrpegFVVEATRDTAMVWGTATDLVGILMDTA-RWSETFPgvVASVVag 306
                         6789999***********988855666666644433.22225667777**************************.*******885555522 PP

                         EEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--..-TTSEE-EESSEEEEEEEECTCEEEEE CS
               START  83 evissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.sssvvRaellpSgiliepksnghskvt 165
                         + +s+g      g +qlm+ael + sp vp R + ++R+++   +++w+++dvSvd    ++   + ++ ++llpSg+li+++sng++kvt
  Seita.2G114000.1.p 307 DFVSTGifascdGQIQLMNAELWVQSPRVPnRTVNILRFSKLVDEKQWAVMDVSVDGILGREVtPARYMGCRLLPSGCLIKDLSNGYCKVT 397
                         568888999999********************************************9888888799************************* PP

                         EEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
               START 166 wvehvdlkgrlphwllrslvksglaegaktwvatlqrqce 205
                         w+ hv++++ ++++++++l  +g+a ga++w+a lqrq+e
  Seita.2G114000.1.p 398 WIVHVEYDETTVPMMFKPLFLTGQALGARRWLASLQRQRE 437
                         *************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.2E-1545118IPR009057Homeodomain-like
PROSITE profilePS5007114.04258118IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.607.6E-1659122IPR009057Homeodomain-like
SMARTSM003899.7E-1660122IPR001356Homeobox domain
CDDcd000864.80E-1463118No hitNo description
PfamPF000462.3E-1563117IPR001356Homeobox domain
PROSITE profilePS5084829.137206441IPR002913START domain
SMARTSM002341.8E-15215438IPR002913START domain
CDDcd088751.39E-77217437No hitNo description
PfamPF018521.5E-32218437IPR002913START domain
SuperFamilySSF559611.48E-18220435No hitNo description
SuperFamilySSF559613.3E-7517677No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 713 aa     Download sequence    Send to blast
MEKGGQQANE NRHCLDFGND PSHKLWNNQE DAIEDRLGDE GYAHTDPEDE DYVPECKPSK  60
PVKRKRLTPQ QTQELMAVYG TCTHPDAEKL EALGTKIGLE PCRVKVWFQN RRPQMKKKAQ  120
VEQNKQIQQE NASLLAENQS LRQAMLIQSC ITCGGKTLPS DPLAEKQRLL IENTRLQDEC  180
LRASVVHGKI IHTSAFTKPA PWIISSGVDR EALRRHADTS MEQFLVLATK GEPMWLPTTD  240
SEMLNYEYGA RMSPCLFGLR PEGFVVEATR DTAMVWGTAT DLVGILMDTA RWSETFPGVV  300
ASVVAGDFVS TGIFASCDGQ IQLMNAELWV QSPRVPNRTV NILRFSKLVD EKQWAVMDVS  360
VDGILGREVT PARYMGCRLL PSGCLIKDLS NGYCKVTWIV HVEYDETTVP MMFKPLFLTG  420
QALGARRWLA SLQRQREYAA ALHSSRDLGN NNTGILKLAQ QMMASFYTAV SGPVTQTQAT  480
SNINEWFGSM GTGVERPDAP VRMVTWRKAG TASGEPADLV LSATTTLWLP STPPERVFDY  540
LRNEKLRGEW DMLTIDTAVK ELGYIATGHP GNVVSVLCSN ITDGTKNKML ILQEARTDVS  600
GSLVVYAPIR ENTMHAVMNS GNNTFVSFLP SGFAILPDGH GKASQALVTA ASTSRAPVCR  660
HNNTEGSLLT MAYQVLLPDN LTAGAMDDVG KLICHAINKI KTAVKADIIL PA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.2G114000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025801379.10.0homeobox-leucine zipper protein ROC6-like
TrEMBLK4A0K40.0K4A0K4_SETIT; Uncharacterized protein
STRINGSi032393m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP83241742
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.11e-141HD-ZIP family protein