PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.2G112200.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ERF
Protein Properties Length: 263aa    MW: 26319.2 Da    PI: 9.1812
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.2G112200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.41.5e-17101150355
                 AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         + GVr+++ +gr++AeIrd + ng  +r++lg+f++ae Aa a+++a+++ +g
  Seita.2G112200.1.p 101 FVGVRRRP-WGRFAAEIRDSTRNG--ARVWLGTFDSAEAAAMAYDQAALSARG 150
                         68******.**********44465..***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103221.918100158IPR001471AP2/ERF domain
SMARTSM003803.1E-31100164IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.7E-27101159IPR001471AP2/ERF domain
PfamPF008471.3E-12101150IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-20101160IPR016177DNA-binding domain
PRINTSPR003674.1E-8101112IPR001471AP2/ERF domain
CDDcd000183.12E-15101159No hitNo description
PRINTSPR003674.1E-8124140IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
METKSTRAPP FHPAHMELLH PIHGGFYLYG DYAAATSSSS SSTSSSDSLP FGMGGGGCCG  60
DEVPAPAASE ASVPAAAAGG AGRAGQLAAP GSSSSDKGAA FVGVRRRPWG RFAAEIRDST  120
RNGARVWLGT FDSAEAAAMA YDQAALSARG PGAALNFPVE RVQESLRALA LGGCSGGGGA  180
AASPAGSPVL ALKSRHSKRK RRKKSEIAAA AAAAAAAANG AVASGRSRSK SAAAAAEQQR  240
FVVELEDLGA DYLEELLRIS ES*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-231011601574Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1197202KRKRRK
2197203KRKRRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.2G112200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004959165.20.0ethylene-responsive transcription factor ERF094-like
RefseqXP_022680468.10.0ethylene-responsive transcription factor ERF094-like
RefseqXP_022680469.10.0ethylene-responsive transcription factor ERF094-like
RefseqXP_022680470.10.0ethylene-responsive transcription factor ERF094-like
RefseqXP_022680471.10.0ethylene-responsive transcription factor ERF094-like
TrEMBLA0A368PXB40.0A0A368PXB4_SETIT; Uncharacterized protein
STRINGPavir.Ba02374.1.p9e-76(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27737249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.11e-20ethylene response factor 1