PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.2G111200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | BBR-BPC | ||||||||
Protein Properties | Length: 366aa MW: 39976.3 Da PI: 10.3478 | ||||||||
Description | BBR-BPC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GAGA_bind | 339.5 | 8.2e-104 | 1 | 341 | 1 | 301 |
GAGA_bind 1 mdddgsre.rnkgyyepaaslkenlglqlmssia.erdaki.........rernlalsekkaavaerd...................mafl 61 mdddg+ + rn+g+y+ +k nlglqlmss++ +rd+k ++ +++ ++ +++++rd m+f Seita.2G111200.1.p 1 MDDDGNLSiRNWGFYDT---MKGNLGLQLMSSVPaDRDTKSllptsaflqHHGHHNAPHQLHSHHSRDsgggggasgsmptephsihMDFS 88 9**************86...5************99*****999999999977788888889999*************************** PP GAGA_bind 62 qrdkalaernkalverdnkllalllvensla.................salpvgvqvlsgtksidslqqlsepqledsave..lreeekle 133 +++++l+ ++ ++r++k+l+ +v + +++p+g+++++++ ++ ++ q pql +++e +e+++ Seita.2G111200.1.p 89 RNEAWLHP-SHHQHPREQKVLHARPVGPAGHvghpghgghpghgghavHHHPTGYGMMPDAPHTLQMMQ---PQLPSQPQEppPCKEDHVP 175 ********.9999***********99988778999************99*********99877655544...3333333222245677788 PP GAGA_bind 134 alpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYk 224 ++p+e++ + ++++ +kkrq++++pk++k kk+kk +++++++ + +++ +r + ++k++++v+ng++lD s++P+PvCsCtGa++qCY+ Seita.2G111200.1.p 176 TPPVEDHSVV-RTEPPVKKRQQGRQPKSPKPKKPKK-PAVPREDGAVNGHAPRGRGPRKTVGMVINGIELDLSNIPTPVCSCTGAPQQCYR 264 9998886555.55566677*****************.99**********99**************************************** PP GAGA_bind 225 WGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301 WG+GGWqSaCCtt+iS+yPLP+++krrgaRiagrKmSqgafkk+LekL +eGy+l+np+DLk++WAkHGtnkfv ir Seita.2G111200.1.p 265 WGAGGWQSACCTTSISTYPLPMNAKRRGARIAGRKMSQGAFKKVLEKLVGEGYNLANPIDLKTFWAKHGTNKFVVIR 341 ***************************************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF06217 | 1.2E-118 | 1 | 341 | IPR010409 | GAGA-binding transcriptional activator |
SMART | SM01226 | 4.3E-179 | 1 | 341 | IPR010409 | GAGA-binding transcriptional activator |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0050793 | Biological Process | regulation of developmental process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 366 aa Download sequence Send to blast |
MDDDGNLSIR NWGFYDTMKG NLGLQLMSSV PADRDTKSLL PTSAFLQHHG HHNAPHQLHS 60 HHSRDSGGGG GASGSMPTEP HSIHMDFSRN EAWLHPSHHQ HPREQKVLHA RPVGPAGHVG 120 HPGHGGHPGH GGHAVHHHPT GYGMMPDAPH TLQMMQPQLP SQPQEPPPCK EDHVPTPPVE 180 DHSVVRTEPP VKKRQQGRQP KSPKPKKPKK PAVPREDGAV NGHAPRGRGP RKTVGMVING 240 IELDLSNIPT PVCSCTGAPQ QCYRWGAGGW QSACCTTSIS TYPLPMNAKR RGARIAGRKM 300 SQGAFKKVLE KLVGEGYNLA NPIDLKTFWA KHGTNKFVVI RFGYRLDRSR FVSLTLQVVV 360 YNNSL* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Positively regulates the homeotic gene BKN3. {ECO:0000269|PubMed:12795701}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00253 | DAP | Transfer from AT2G01930 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.2G111200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004956022.1 | 0.0 | protein Barley B recombinant | ||||
Refseq | XP_012699427.1 | 0.0 | protein Barley B recombinant | ||||
Swissprot | Q8GUC3 | 1e-148 | BBR_HORVU; Protein Barley B recombinant | ||||
TrEMBL | A0A368PXT8 | 0.0 | A0A368PXT8_SETIT; Uncharacterized protein | ||||
STRING | Si029480m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2211 | 36 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14685.3 | 2e-50 | basic pentacysteine 2 |
Link Out ? help Back to Top | |
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Phytozome | Seita.2G111200.1.p |