PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.2G104000.1.p
Common NameLOC101770235, SETIT_032599mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family MYB_related
Protein Properties Length: 311aa    MW: 35053.9 Da    PI: 4.9144
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.2G104000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding422.2e-13141184447
                         S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         WT eE+ +++ + +++G g Wk I+r++ ++Rt+ q+ s+ qky
  Seita.2G104000.1.p 141 WTNEEHRQFLYGLRKYGRGKWKDISREFVTTRTPVQVSSHAQKY 184
                         *******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0071741567IPR001005SANT/Myb domain
PROSITE profilePS5129415.277133189IPR017930Myb domain
SuperFamilySSF466891.93E-16135189IPR009057Homeodomain-like
SMARTSM007172.5E-11137187IPR001005SANT/Myb domain
TIGRFAMsTIGR015574.8E-15137188IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.601.2E-10138184IPR009057Homeodomain-like
PfamPF002498.0E-10141184IPR001005SANT/Myb domain
CDDcd001672.18E-9141185No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MDPMFNGEWS ALEIEMVKSL IASHNPNNNF VDGPNKKHND IVNDIQSWFP WKERHQVIEF  60
YVELVVEMMS LTQSGNHSVV AIDNSVNNNS GIPVEDPSID NMDLLFAHMT DKIPEAMQMV  120
DEVSKSKAII PPKGRNKGSF WTNEEHRQFL YGLRKYGRGK WKDISREFVT TRTPVQVSSH  180
AQKYFHRQNT SEKQRYSIND VSLYDAEPWA QNDSSNWEAP AFAGGAYNPN YYGSGSQVAT  240
RNNLAQVWPP FMYSADQASS SQATTWTGQQ MGPSSSAALA MEDAGSQMAW IGDQQGGDIL  300
REQWMDIDKV *
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.2G104000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004959145.10.0transcription factor SRM1
TrEMBLK4A1570.0K4A157_SETIT; Uncharacterized protein
STRINGSi032599m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP84230133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10580.23e-25MYB_related family protein