PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.2G101000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | TCP | ||||||||
Protein Properties | Length: 145aa MW: 15838.1 Da PI: 11.8713 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 65.9 | 1.4e-20 | 38 | 108 | 2 | 73 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec 73 a +kdrhsk+ T +g+RdR v l +++a++f+d+q LG d++sk+i WL+ +ak++ + ++ +++a+ + Seita.2G101000.1.p 38 ARGKDRHSKVVTVRGLRDRHVQL-VPTAIQFYDIQYCLGIDQPSKAIVWLIHAAKTSTSSMLSLANTPAHTA 108 779********************.689******************************999999977776333 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 16.766 | 40 | 97 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 2.8E-18 | 40 | 103 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
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Protein Sequence Length: 145 aa Download sequence Send to blast |
MKEIGMERTA ASARTPRWTA ARWPPRRHGG RAGWRTAARG KDRHSKVVTV RGLRDRHVQL 60 VPTAIQFYDI QYCLGIDQPS KAIVWLIHAA KTSTSSMLSL ANTPAHTAPH LDPCAHHRSC 120 REPPAPHRHR LGGPVGESPR AGGG* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.2G101000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004959137.1 | 1e-101 | transcription factor TCP13-like | ||||
TrEMBL | A0A368PXN6 | 1e-100 | A0A368PXN6_SETIT; Uncharacterized protein | ||||
STRING | Pavir.J37910.1.p | 5e-25 | (Panicum virgatum) | ||||
STRING | Si022811m | 2e-23 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP58313 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18390.2 | 4e-20 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2 |
Link Out ? help Back to Top | |
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Phytozome | Seita.2G101000.1.p |