PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.2G086800.1.p | ||||||||
Common Name | LOC105913723, SETIT_032189mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 247aa MW: 26810.5 Da PI: 5.7048 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 62.8 | 3.8e-20 | 16 | 63 | 1 | 48 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48 k+ien+ rqv fskRr+g++KKA+ELS+LC+a v ++fs g+ + Seita.2G086800.1.p 16 KPIENDQARQVCFSKRRQGLFKKASELSILCGAMVGTVVFSAIGRAFS 63 78***************************************9887655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.7E-29 | 8 | 67 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 24.922 | 8 | 68 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.83E-25 | 9 | 81 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 8.82E-35 | 9 | 79 | No hit | No description |
PRINTS | PR00404 | 1.4E-18 | 10 | 30 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.1E-23 | 18 | 64 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.4E-18 | 30 | 45 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.4E-18 | 45 | 66 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MVKGQKSKGR QKIEIKPIEN DQARQVCFSK RRQGLFKKAS ELSILCGAMV GTVVFSAIGR 60 AFSFGHPSFD EVVNRFLNPV APDVPAAGDA SNDNVGPPVT DTVHKLNMEY LELEQSLESE 120 KKRKERLQEA TEKEMGEPMM QWLNANIMEL GLDELQAFQK KLEEIHDIVK EKVNKVMVEG 180 RQTPGSLPQP PMEMGSTSQS ANPMASTAPS SSIALIDGFE AVNDPLLSGV HGVGGLGNVP 240 NNQTHG* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.2G086800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012699030.1 | 0.0 | agamous-like MADS-box protein AGL29 | ||||
TrEMBL | K4A004 | 0.0 | K4A004_SETIT; Uncharacterized protein | ||||
STRING | Si032189m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1224 | 36 | 128 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 2e-25 | AGAMOUS-like 62 |
Link Out ? help Back to Top | |
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Phytozome | Seita.2G086800.1.p |
Entrez Gene | 105913723 |