PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.2G079900.1.p
Common NameSETIT_031957mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ERF
Protein Properties Length: 331aa    MW: 36504.5 Da    PI: 4.7818
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.2G079900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.11.6e-1682131255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         +++G+r+++ rg+W+AeIrdp     +  r++lg++ ++e+Aa+a++  +++ +g
  Seita.2G079900.1.p  82 QFRGIRRRP-RGKWAAEIRDPH----KgVRVWLGTYNSPEDAARAYDSEARRVRG 131
                         69*******.8*********72....35*******************99999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.109.5E-2982141IPR001471AP2/ERF domain
CDDcd000182.50E-2882140No hitNo description
SuperFamilySSF541717.85E-2082141IPR016177DNA-binding domain
PROSITE profilePS5103222.03682139IPR001471AP2/ERF domain
SMARTSM003801.6E-3182145IPR001471AP2/ERF domain
PRINTSPR003671.3E-78394IPR001471AP2/ERF domain
PfamPF008471.9E-983130IPR001471AP2/ERF domain
PRINTSPR003671.3E-7105121IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MCGGAVLPDD VPPSQRQRLT AGQILPHSKK LRSPRVGSEK RAREEEDFQA TFVESGESEV  60
VSKDKARPLT APTGVVVARD NQFRGIRRRP RGKWAAEIRD PHKGVRVWLG TYNSPEDAAR  120
AYDSEARRVR GKKAKVNFPD ETPVASDKRL AEPTSVKVAK TGTQEKLTIN NMTNSNVYQH  180
PVVDHTVPEP SVQTQNISLE NSVASVQEPL VNLSSYQGRS FNSCSEFRLE NDTRTTDIPS  240
VLAPVPTLTE VDESAFLQGT ADAVVPPVTG DASVDLFEWQ PYLENFLIDS SDESFNHSLV  300
CECDGSQCPD VGSNMNLWNF DDMPVPDDFF *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-1878139163ATERF1
3gcc_A2e-1878139163ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional activator that may be involved in defense signaling pathway. Binds in vitro to the DNA sequence 5'-AGCCGCC-3' of the GCC-box element found in pathogenesis-related (PR) gene promoters. The transcriptional activation is enhanced in vitro by the presence of MPK12/BWMK1. {ECO:0000269|PubMed:12913152}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.2G079900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022679984.11e-138ethylene-responsive transcription factor 1-like
SwissprotQ6K7E62e-71ERF1_ORYSJ; Ethylene-responsive transcription factor 1
TrEMBLA0A368PWR50.0A0A368PWR5_SETIT; Uncharacterized protein
STRINGSi031957m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP103938134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72360.36e-33ERF family protein
Publications ? help Back to Top
  1. Kim CY, et al.
    Identification of rice blast fungal elicitor-responsive genes by differential display analysis.
    Mol. Plant Microbe Interact., 2000. 13(4): p. 470-4
    [PMID:10755311]
  2. Koo SC, et al.
    OsBWMK1 mediates SA-dependent defense responses by activating the transcription factor OsWRKY33.
    Biochem. Biophys. Res. Commun., 2009. 387(2): p. 365-70
    [PMID:19607808]
  3. Iwamoto M,Takano M
    Phytochrome-regulated EBL1 contributes to ACO1 upregulation in rice.
    Biotechnol. Lett., 2011. 33(1): p. 173-8
    [PMID:20872166]
  4. Serra TS, et al.
    OsRMC, a negative regulator of salt stress response in rice, is regulated by two AP2/ERF transcription factors.
    Plant Mol. Biol., 2013. 82(4-5): p. 439-55
    [PMID:23703395]
  5. Jisha V, et al.
    Overexpression of an AP2/ERF Type Transcription Factor OsEREBP1 Confers Biotic and Abiotic Stress Tolerance in Rice.
    PLoS ONE, 2015. 10(6): p. e0127831
    [PMID:26035591]
  6. Lourenço TF, et al.
    The Rice E3-Ubiquitin Ligase HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENE1 Modulates the Expression of ROOT MEANDER CURLING, a Gene Involved in Root Mechanosensing, through the Interaction with Two ETHYLENE-RESPONSE FACTOR Transcription Factors.
    Plant Physiol., 2015. 169(3): p. 2275-87
    [PMID:26381316]