PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.2G073200.1.p
Common NameSETIT_032815mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ERF
Protein Properties Length: 301aa    MW: 31774.5 Da    PI: 6.226
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.2G073200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.66.2e-18147195556
                 AP2   5 GVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                         GVr+++ +g+++AeIrd + ng   r+++g+f+t+e Aa a+++a+ +++g+
  Seita.2G073200.1.p 147 GVRRRP-WGKYAAEIRDSTRNG--ERVWIGTFDTPEAAALAYDQAAYSMRGA 195
                         ******.**********44465..*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103221.259144202IPR001471AP2/ERF domain
SuperFamilySSF541712.81E-21145204IPR016177DNA-binding domain
PRINTSPR003672.8E-7145156IPR001471AP2/ERF domain
PfamPF008476.3E-13146194IPR001471AP2/ERF domain
SMARTSM003801.9E-29147208IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-27147203IPR001471AP2/ERF domain
CDDcd000185.64E-15147203No hitNo description
PRINTSPR003672.8E-7168184IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MEPSFSSSYN GHAISAAYSH EWQPLEQDVD GSLFSLPAAA ACYVDSRIDT TYSSTIMAAT  60
AFHPSSSATW AASSSGLVPP SHHYQLQQLH FGGGMVDMDQ FSALMGAATI SSGAPTTTYH  120
HGGVMAAANA LPAMMQQEAA EAPTLIGVRR RPWGKYAAEI RDSTRNGERV WIGTFDTPEA  180
AALAYDQAAY SMRGAAAVLN FPVEHVQESL RALGLTGAAG DDSPVLALKR RHCIRKRGPK  240
NKQKPAAGKE GQLPAAAREQ MAAATASHGH GKQMQAASCA LELEDLGAEY LEELLALSDQ  300
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-28139205975Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.2G073200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7278831e-108KJ727883.1 Zea mays clone pUT5976 AP2-EREBP transcription factor (EREB166) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004959051.31e-140ethylene-responsive transcription factor ERF094
TrEMBLK4A1S10.0K4A1S1_SETIT; Uncharacterized protein
STRINGSi032815m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27737249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.14e-32ethylene response factor 1