PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.2G052000.1.p | ||||||||
Common Name | LOC101753729, SETIT_030256mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | HSF | ||||||||
Protein Properties | Length: 366aa MW: 40917.6 Da PI: 4.5573 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 112.3 | 3.4e-35 | 47 | 137 | 2 | 101 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 Fl+k+y++++d++++ ++sws ++nsfvv+d++ fa+ +Lp++Fkh+nf+SFvRQLn+YgF+kv+ ++ weF+++ F +g+++ Seita.2G052000.1.p 47 FLTKTYDMVDDPATDPIVSWSGTNNSFVVWDPHAFATVLLPRHFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQRH 128 9********************999*****************************************999.........************** PP XXXXXXXXX CS HSF_DNA-bind 93 llekikrkk 101 ll++i+r+k Seita.2G052000.1.p 129 LLKNIRRRK 137 *******98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 3.8E-39 | 43 | 136 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 2.79E-37 | 43 | 136 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 1.2E-63 | 43 | 136 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.4E-19 | 47 | 70 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 1.5E-31 | 47 | 136 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.4E-19 | 85 | 97 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 86 | 110 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.4E-19 | 98 | 110 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 366 aa Download sequence Send to blast |
MLNPVKEESH GDGGLVPGAA AGDGPSTAAA AAPRPMEGLH DAGPPPFLTK TYDMVDDPAT 60 DPIVSWSGTN NSFVVWDPHA FATVLLPRHF KHNNFSSFVR QLNTYGFRKV DPDRWEFANE 120 GFLRGQRHLL KNIRRRKPPA QNASNQQSLG PYLEVGHFGY DAEIDQLKRD KQLLMAEVLK 180 LRQEQQNTKA NLKAMEDRLQ GTEQKQQQMM AFLARVMRNP EFLKHLVSQN EMRKELQDAI 240 SKKRRRRIDQ GPEVDELGAG SSLEQGSPVL FNPQESVEFL VDGIPTDLES PAFDGQGLAE 300 PQDIDLGTSE QQPDMPQEDL TDNFWEQLLN EGLGEENDNP VIEDDMNVLS EKMGYLNSDG 360 PTSRE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 2e-26 | 42 | 136 | 12 | 120 | Heat shock factor protein 1 |
5d5u_B | 2e-26 | 42 | 136 | 21 | 129 | Heat shock factor protein 1 |
5d5v_B | 2e-26 | 42 | 136 | 21 | 129 | Heat shock factor protein 1 |
5d5v_D | 2e-26 | 42 | 136 | 21 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 241 | 246 | KKRRRR |
2 | 242 | 247 | KRRRRI |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00371 | DAP | Transfer from AT3G22830 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.2G052000.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By heat stress. {ECO:0000269|PubMed:18064488}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT056006 | 0.0 | BT056006.1 Zea mays full-length cDNA clone ZM_BFc0120E04 mRNA, complete cds. | |||
GenBank | EU956700 | 0.0 | EU956700.1 Zea mays clone 1571069 heat shock factor protein HSF30 mRNA, complete cds. | |||
GenBank | JX469968 | 0.0 | JX469968.1 Zea mays subsp. mays clone UT3231 HSF-type transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004955620.1 | 0.0 | heat stress transcription factor A-2b | ||||
Swissprot | Q6VBB2 | 0.0 | HFA2B_ORYSJ; Heat stress transcription factor A-2b | ||||
TrEMBL | K3ZUH5 | 0.0 | K3ZUH5_SETIT; Uncharacterized protein | ||||
STRING | Si030256m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP308 | 37 | 231 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G22830.1 | 1e-106 | heat shock transcription factor A6B |
Link Out ? help Back to Top | |
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Phytozome | Seita.2G052000.1.p |
Entrez Gene | 101753729 |
Publications ? help Back to Top | |||
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