PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.2G038300.1.p
Common NameSETIT_032865mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family LBD
Protein Properties Length: 682aa    MW: 72077.9 Da    PI: 4.4672
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.2G038300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26098.95.2e-31161172100
              DUF260   2 CaaCkvlrrkCakdCvlapyfpa..eqpkkfanvhklFGasnvlkllkal.peeeredamsslvyeAearardPvyGavgvilklqqqleq 89 
                         Ca+C++lrr+C+++Cv+apyfpa  +++++fa+vh++FGasnv ++l+++  +++r++a+++lv eA+ar+rdP  G+v+ +  lq   e+
  Seita.2G038300.1.p  16 CAGCRTLRRRCVPGCVFAPYFPAegDDTSRFAAVHRVFGASNVARMLEDVsLPSDRHRAAETLVEEARARVRDPALGCVSYVAVLQMLNEK 106
                         ***********************55568**********************55777************************************ PP

              DUF260  90 lkaelallkee 100
                         +++++++++ee
  Seita.2G038300.1.p 107 AREQVDAVREE 117
                         ***99999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.90414118IPR004883Lateral organ boundaries, LOB
PfamPF031951.0E-3116115IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 682 aa     Download sequence    Send to blast
MSEEDEAEAQ PVQTTCAGCR TLRRRCVPGC VFAPYFPAEG DDTSRFAAVH RVFGASNVAR  60
MLEDVSLPSD RHRAAETLVE EARARVRDPA LGCVSYVAVL QMLNEKAREQ VDAVREEIAG  120
ELGAGAAAEP VDVAAAEPAA RVEASAQAER ALAHARERDA ELLAVRNAAD LEWWRQQRQA  180
EKHAAGGRNT NEQVAETENT AAAAAAKGES SSEQTMVMTQ AEAGTELDST EGNGYPRQQM  240
AETEEPAPAA VAASERAMLT PPAAAVDQRH HLAAPHAGTE PSIPGIGHLQ QKVLEDKQSS  300
TAAAEAAREE AMASGQAPAA APQHHESAAT QLAGAGTGFL DGEQWAAAEA LAKELDTMRR  360
RYAAAQQHHH PAAAHYASMG LHVTPRLQKP PHQQAAPAAE VASGQDSMAT LAQQIAEAEA  420
EAAAEQDMMM QLLAAGAPQY GNLAAQYDVD AELDVTLVHG HQDMRQQMTE LGTLGHEPPQ  480
EIVQQLAAAA KVAMEQRIMP QIATAELAGE QETIMQQFAA AAELAREKEL IVQQARQQEM  540
AMLLQASAAP MAQYSETELG VSLGHQPLVQ QLLQEQQLAD AVGVVGEPNT TTVVQHVAAY  600
ADAEHGRDSG ATAAFRPPGL SEAAPFLVEQ SLQGQTARVL GLQMGSSLPP LGQPHAQASQ  660
QQGTDGGDDG QSSDLTAYLY Y*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-281613412131LOB family transfactor Ramosa2.1
5ly0_B2e-281613412131LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.2G038300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022680381.10.0uncharacterized protein LOC111256464
TrEMBLA0A368PUY30.0A0A368PUY3_SETIT; Uncharacterized protein
STRINGSi032865m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16457913
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63090.41e-28LBD family protein