PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.2G037100.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | NF-YA | ||||||||
Protein Properties | Length: 266aa MW: 28038.5 Da PI: 10.2641 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 94.4 | 1.3e-29 | 132 | 188 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 dep+YVNaKQ+++Il+RR +Rak++++ ++ +++rkpylheSRh hAlrR+Rg+gGrF Seita.2G037100.2.p 132 DEPVYVNAKQFNGILRRRLARAKAARDLRV-SRNRKPYLHESRHLHALRRARGTGGRF 188 79****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 3.7E-33 | 130 | 191 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 34.274 | 131 | 191 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 4.7E-28 | 133 | 188 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 2.9E-21 | 134 | 156 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 2.9E-21 | 165 | 188 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 266 aa Download sequence Send to blast |
MRSAAMGFHE HGPLGFQLTT DGGRGHGGGG ATAAPWWAAA QGQGCAASKF PISSGDSDPW 60 QDLKYHEPST AAIAAYPELH KYHAPFDLAL GQSMVWSNNA DAGQGQSFGL YSPYGAQPMH 120 GRVLLPPAIA ADEPVYVNAK QFNGILRRRL ARAKAARDLR VSRNRKPYLH ESRHLHALRR 180 ARGTGGRFLS TSSLAAGDQA PPLASTSLGG PEPTKGSAST PARLQPGQVR QDVFLSPLIN 240 MAGNGDGQAR WASAAPRACC DLLKV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4g91_A | 5e-18 | 132 | 190 | 2 | 61 | HAPB protein |
4g92_A | 5e-18 | 132 | 190 | 2 | 61 | HAPB protein |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 21 | 29 | GGRGHGGGG |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.2G037100.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU968217 | 4e-79 | EU968217.1 Zea mays clone 316709 nuclear transcription factor Y subunit A-10 mRNA, complete cds. | |||
GenBank | EU975023 | 4e-79 | EU975023.1 Zea mays clone 465284 nuclear transcription factor Y subunit A-10 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004955491.1 | 0.0 | nuclear transcription factor Y subunit A-10 isoform X2 | ||||
TrEMBL | A0A368PX19 | 0.0 | A0A368PX19_SETIT; Uncharacterized protein | ||||
STRING | Si032469m | 1e-151 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06510.3 | 5e-25 | nuclear factor Y, subunit A10 |
Link Out ? help Back to Top | |
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Phytozome | Seita.2G037100.2.p |