PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.2G037100.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family NF-YA
Protein Properties Length: 286aa    MW: 30204.1 Da    PI: 10.1107
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.2G037100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA94.21.5e-29152208158
           CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                         dep+YVNaKQ+++Il+RR +Rak++++ ++ +++rkpylheSRh hAlrR+Rg+gGrF
  Seita.2G037100.1.p 152 DEPVYVNAKQFNGILRRRLARAKAARDLRV-SRNRKPYLHESRHLHALRRARGTGGRF 208
                         79****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005213.7E-33150211IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115234.274151211IPR001289Nuclear transcription factor Y subunit A
PfamPF020455.3E-28153208IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006163.1E-21154176IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006163.1E-21185208IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MNSSCARLSA IKHSFLCTFS LLQAAMGFHE HGPLGFQLTT DGGRGHGGGG ATAAPWWAAA  60
QGQGCAASKF PISSGDSDPW QDLKYHEPST AAIAAYPELH KYHAPFDLAL GQSMVWSNNA  120
DAGQGQSFGL YSPYGAQPMH GRVLLPPAIA ADEPVYVNAK QFNGILRRRL ARAKAARDLR  180
VSRNRKPYLH ESRHLHALRR ARGTGGRFLS TSSLAAGDQA PPLASTSLGG PEPTKGSAST  240
PARLQPGQVR QDVFLSPLIN MAGNGDGQAR WASAAPRACC DLLKV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_A6e-18152210261HAPB protein
4g92_A6e-18152210261HAPB protein
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14149GGRGHGGGG
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.2G037100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9682174e-79EU968217.1 Zea mays clone 316709 nuclear transcription factor Y subunit A-10 mRNA, complete cds.
GenBankEU9750234e-79EU975023.1 Zea mays clone 465284 nuclear transcription factor Y subunit A-10 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004955490.10.0nuclear transcription factor Y subunit A-10 isoform X1
TrEMBLA0A368PUS00.0A0A368PUS0_SETIT; Uncharacterized protein
STRINGSi032469m1e-151(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP146632123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06510.32e-24nuclear factor Y, subunit A10