PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Seita.2G026600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 394aa MW: 43487.5 Da PI: 6.0919 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 43.1 | 5.5e-14 | 12 | 58 | 3 | 49 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 i+n+ r++tf kRr+g+ K A LS+L++a+va+ + s++gk+ + Seita.2G026600.1.p 12 IQNNNSRSITFFKRRAGLYKTAADLSTLTGARVAIALESESGKMSSF 58 99******************************************988 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.5E-13 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 17.072 | 2 | 62 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.0E-8 | 4 | 24 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 8.64E-17 | 4 | 70 | No hit | No description |
SuperFamily | SSF55455 | 4.84E-16 | 5 | 72 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.4E-16 | 12 | 58 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.0E-8 | 24 | 39 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.0E-8 | 39 | 60 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 394 aa Download sequence Send to blast |
MTRPRRSGIS YIQNNNSRSI TFFKRRAGLY KTAADLSTLT GARVAIALES ESGKMSSFGT 60 PSAGPIIDSF LSGKAPMDPF VNKEQKSEIT ILQNEVFKVE KEKFMEDKRT KETIARAKEV 120 QETLGKAKLA YGKIEDLSVE ELNELVHDLS QIEQEIDDRL RPQQPSYQLE VGGSRDPFLG 180 RPSSSSSPSS QIQMPPRRLP WTPIQPSLQL PKSSWSLPQS SRSRSSLLNP SMLPSAQAQP 240 ISMPPFQHSQ MPQHALAITF YNEFPPPSSS QQPPTPLPIE AEHYMVEHPE NHASTQDFTA 300 GHPFANHQWP SPIPSNEPYY DISLYGLNLY LGDHGDYGGL VTVERDMAGP SGLHQQTYDC 360 PYRNFLGSSS SGESHGDYGP GNNVGDMAHL GDS* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Seita.2G026600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004958932.1 | 0.0 | uncharacterized protein LOC101780877 | ||||
TrEMBL | A0A368PUF6 | 0.0 | A0A368PUF6_SETIT; Uncharacterized protein | ||||
STRING | Si032862m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3089 | 22 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G60440.1 | 2e-11 | AGAMOUS-like 62 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Seita.2G026600.1.p |