PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.1G342700.1.p | ||||||||
Common Name | LOC101754381, SETIT_017568mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | ERF | ||||||||
Protein Properties | Length: 368aa MW: 40370.8 Da PI: 4.5083 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.2 | 4.7e-19 | 113 | 162 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+G+r+++ +g+W+AeIrdp + r++lg+f ++eeAa+a++a +++++g Seita.1G342700.1.p 113 QYRGIRQRP-WGKWAAEIRDPQ----KgVRVWLGTFNSPEEAARAYDAEARRIRG 162 69*******.**********94....35************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 5.2E-35 | 113 | 176 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.67 | 113 | 170 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 8.2E-32 | 113 | 171 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.80E-32 | 113 | 172 | No hit | No description |
SuperFamily | SSF54171 | 9.81E-22 | 113 | 171 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.2E-11 | 114 | 162 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-10 | 114 | 125 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-10 | 136 | 152 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0070483 | Biological Process | detection of hypoxia | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 368 aa Download sequence Send to blast |
MCGGAILANL TKQPGPRRLT ERDLWQEKKK PKRGGGGGSR WFLAEEDEDF EADFEDFQGE 60 SEESDLELGE GKDDDVVEIK PFAATSKDGL STMTTAGYDG PAARSAKRKR KNQYRGIRQR 120 PWGKWAAEIR DPQKGVRVWL GTFNSPEEAA RAYDAEARRI RGKKAKVNFP DAPTVAQKRR 180 SGPPAAKAPK SSVEQKPAVK PAVNSLANTN TYFYPPADYT LSKPFVQHEN MPFPPAMNSA 240 SPIEDPIMNL HSDQGSNSFG CSDLSWENDT KTSDISSIAP INTIAEGDEC AFVNSNSNNS 300 LVPSVMETNP VDLTEGLTDL EPYMRFLLDD GASESIDSLL NVDGSQDVVS NMDLWSFDDM 360 PMVGDIY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-19 | 112 | 170 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 2e-19 | 113 | 170 | 5 | 63 | ATERF1 |
3gcc_A | 2e-19 | 113 | 170 | 5 | 63 | ATERF1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional activator that may be involved in defense signaling pathway. Binds in vitro to the DNA sequence 5'-AGCCGCC-3' of the GCC-box element found in pathogenesis-related (PR) gene promoters. The transcriptional activation is enhanced in vitro by the presence of MPK12/BWMK1. {ECO:0000269|PubMed:12913152}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00204 | DAP | Transfer from AT1G53910 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.1G342700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012698581.1 | 0.0 | ethylene-responsive transcription factor 1 | ||||
Refseq | XP_022685012.1 | 0.0 | ethylene-responsive transcription factor 1 | ||||
Swissprot | Q6K7E6 | 1e-165 | ERF1_ORYSJ; Ethylene-responsive transcription factor 1 | ||||
TrEMBL | K3YTH3 | 0.0 | K3YTH3_SETIT; Uncharacterized protein | ||||
STRING | Si017568m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1039 | 38 | 134 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G53910.3 | 4e-37 | related to AP2 12 |
Link Out ? help Back to Top | |
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Phytozome | Seita.1G342700.1.p |
Entrez Gene | 101754381 |