PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.1G338400.2.p
Common NameLOC101768713, SETIT_016649mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family MYB_related
Protein Properties Length: 588aa    MW: 65079.2 Da    PI: 7.969
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.1G338400.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.72.2e-07470517347
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                         +WT  E  +lvd+v+++G g W+ I +        Rt  ++k++w+++
  Seita.1G338400.2.p 470 AWTLCEVVKLVDGVARYGAGKWSEIRKLSFssySYRTSVDLKDKWRNL 517
                         7************************9999999*99***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.208463522IPR017930Myb domain
SuperFamilySSF466894.68E-14465521IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-11465520IPR009057Homeodomain-like
SMARTSM007178.8E-7467520IPR001005SANT/Myb domain
CDDcd116602.14E-17469519No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 588 aa     Download sequence    Send to blast
MEVDGSNSAL VNKSEENDFE KKGSSDPVVY QLVRVEGDGT LVPATEDDVL EFEHFLQDEK  60
VNFPSIEDVG HVEEFFSNDC ILLKKSDLED GSSKVKTLEL HTQKMGTDLE ENRLDGSLGP  120
PSNSGVLHGQ QPDKFLAEQG DSNIAQQDNA STETAKPIVL NDSCSAEKDK ADACSRPVDD  180
TSTEPSVSGV TSYVPDFSIL RGEVCLDDLT IRELQEAFRA TFGRQTTVKD KIWLKRRITM  240
GLTNSCDVPS SGCVVKDYKI VGKDVRQEVS NTGGIPKIGL QSTLVRDQVT YPGNEGDSPS  300
SSYYQSEDQQ GSSKRFKRVP IHNDEPQGNL LAGQCTNKRT RKPTKRYIEE LSDIETHEST  360
GKLSSPAKRT AHDEVLLKPR AAPFHELESL STIYPTRKDT LGGFSVHVPY VSRMRRGRPR  420
KDFISFVVNP ERGHLEAVDR KGVQNLQANV YKAASKPKIK RGLTRKHHRA WTLCEVVKLV  480
DGVARYGAGK WSEIRKLSFS SYSYRTSVDL KDKWRNLIRA TQTQLPAQKD GVCPRKINPS  540
IIPIPPSILL RVKELNELQS QGGGFTAPVK FSGQNSKVVQ GKGLGFL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1414420RRGRPRK
2414421RRGRPRKD
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.1G338400.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004954094.10.0uncharacterized protein LOC101768713 isoform X2
TrEMBLK3YR320.0K3YR32_SETIT; Uncharacterized protein
STRINGSi016649m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.11e-84TRF-like 6