PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.1G338400.1.p | ||||||||
Common Name | LOC101768713, SETIT_016649mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | MYB_related | ||||||||
Protein Properties | Length: 624aa MW: 68989.5 Da PI: 7.516 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 22.6 | 2.4e-07 | 506 | 553 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 +WT E +lvd+v+++G g W+ I + Rt ++k++w+++ Seita.1G338400.1.p 506 AWTLCEVVKLVDGVARYGAGKWSEIRKLSFssySYRTSVDLKDKWRNL 553 7************************9999999*99***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.208 | 499 | 558 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-11 | 501 | 556 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 5.07E-14 | 501 | 557 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.8E-7 | 503 | 556 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 1.95E-17 | 505 | 555 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 624 aa Download sequence Send to blast |
MEVDGSNSAL VNKSEENDFE KKGSSDPVVY QLVRVEGDGT LVPATEDDVL EFEHFLQDEK 60 VNFPSIEDVG HVEEFFSNDC ILLKKSDLED GSSKVKTLEL HTQKMGTDLE ENRLDGSLGP 120 PSNSGVLHGQ QPDKFLAEQG DSNIAQQDNA STETAKPIVL NDSCSAEKDK ADACSRPVDD 180 TSTEPSVSGV TSYVPDFSIL RGEVCLDDLT IRELQEAFRA TFGRQTTVKD KIWLKRRITM 240 GLTNSCDVPS SGCVVKDYKI VGKDVRQEVS NTGGIPKIGL QSTLVRDQVT YPGNEGDSPS 300 SSYYQSEDQQ GSSKRFKRVP IHNDEPQGNL LAGQCTNKRT RKPTKRYIEE LSDIETHEST 360 GKLSSPAKRT AHDEVLLKPR AAPFHELESL STIYPTRKDT LGGFSVHVPY VSRMRRGRPR 420 KDFISFVDKE PSVQCNVQTT VGMLSKECEE GNHVRKASEV PPTVNPERGH LEAVDRKGVQ 480 NLQANVYKAA SKPKIKRGLT RKHHRAWTLC EVVKLVDGVA RYGAGKWSEI RKLSFSSYSY 540 RTSVDLKDKW RNLIRATQTQ LPAQKDGVCP RKINPSIIPI PPSILLRVKE LNELQSQGGG 600 FTAPVKFSGQ NSKVVQGKGL GFL* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 414 | 420 | RRGRPRK |
2 | 414 | 421 | RRGRPRKD |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.1G338400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004954093.1 | 0.0 | uncharacterized protein LOC101768713 isoform X1 | ||||
TrEMBL | K3YQV5 | 0.0 | K3YQV5_SETIT; Uncharacterized protein | ||||
STRING | Si016649m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6966 | 33 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72650.1 | 8e-90 | TRF-like 6 |
Link Out ? help Back to Top | |
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Phytozome | Seita.1G338400.1.p |
Entrez Gene | 101768713 |