PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.1G338100.2.p | ||||||||
Common Name | SETIT_019645mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | NF-YA | ||||||||
Protein Properties | Length: 222aa MW: 23923 Da PI: 11.5571 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 103.4 | 2e-32 | 52 | 108 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVN+KQy++Il+RRq Rakle+++kl ++rkpylheSRh hA++R+RgsgGrF Seita.1G338100.2.p 52 NEPIYVNPKQYHGILRRRQLRAKLEAQNKL-VRARKPYLHESRHLHAMKRARGSGGRF 108 59****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 9.5E-38 | 50 | 111 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 38.535 | 51 | 111 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 1.3E-28 | 53 | 108 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 8.4E-24 | 54 | 76 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 8.4E-24 | 85 | 108 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence Send to blast |
MACVSYPYND SGSGGVWAAY GSRASAATVF HPKIAGGGTS ARIPLPLELA ENEPIYVNPK 60 QYHGILRRRQ LRAKLEAQNK LVRARKPYLH ESRHLHAMKR ARGSGGRFLN TKQLQQQQQS 120 HTASTRSTAN GTSSSGSTHL RLGGGTAGNQ AMPTTKAMAS HDNCKKAVAS APAFTVTPML 180 RRDDAFFQHP SHHLSFSGHF GQASAQAGMH KGTQQRVPVM R* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 4e-21 | 52 | 113 | 2 | 63 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.1G338100.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004954092.1 | 1e-163 | nuclear transcription factor Y subunit A-8 isoform X2 | ||||
Refseq | XP_022681003.1 | 1e-164 | nuclear transcription factor Y subunit A-5 isoform X4 | ||||
Swissprot | Q9LNP6 | 2e-39 | NFYA8_ARATH; Nuclear transcription factor Y subunit A-8 | ||||
TrEMBL | A0A368PS19 | 1e-162 | A0A368PS19_SETIT; Uncharacterized protein | ||||
TrEMBL | A0A368PUD3 | 1e-162 | A0A368PUD3_SETIT; Uncharacterized protein | ||||
STRING | Si019645m | 1e-162 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G17590.4 | 3e-39 | nuclear factor Y, subunit A8 |
Link Out ? help Back to Top | |
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Phytozome | Seita.1G338100.2.p |
Publications ? help Back to Top | |||
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