PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.1G338100.1.p
Common NameSETIT_019645mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family NF-YA
Protein Properties Length: 270aa    MW: 29218 Da    PI: 11.2573
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.1G338100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA1032.8e-32100156158
           CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                         +ep+YVN+KQy++Il+RRq Rakle+++kl  ++rkpylheSRh hA++R+RgsgGrF
  Seita.1G338100.1.p 100 NEPIYVNPKQYHGILRRRQLRAKLEAQNKL-VRARKPYLHESRHLHAMKRARGSGGRF 156
                         59****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005219.5E-3898159IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115238.53599159IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.8E-28101156IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006169.8E-24102124IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006169.8E-24133156IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MLLPSSSSSS ASKGNSLRKM VNDHMRSTLT FDNKQPLFAS QDIDYVQPIA CVSYPYNDSG  60
SGGVWAAYGS RASAATVFHP KIAGGGTSAR IPLPLELAEN EPIYVNPKQY HGILRRRQLR  120
AKLEAQNKLV RARKPYLHES RHLHAMKRAR GSGGRFLNTK QLQQQQQSHT ASTRSTANGT  180
SSSGSTHLRL GGGTAGNQAM PTTKAMASHD NCKKAVASAP AFTVTPMLRR DDAFFQHPSH  240
HLSFSGHFGQ ASAQAGMHKG TQQRVPVMR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A7e-21100161263NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.1G338100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004954092.10.0nuclear transcription factor Y subunit A-8 isoform X2
TrEMBLA0A368PUD30.0A0A368PUD3_SETIT; Uncharacterized protein
STRINGSi019645m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132762833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17590.41e-38nuclear factor Y, subunit A8