PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.1G334400.1.p | ||||||||
Common Name | SETIT_016791mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | WRKY | ||||||||
Protein Properties | Length: 565aa MW: 59783.7 Da PI: 4.853 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 96.2 | 2.3e-30 | 314 | 373 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK+ kg+++pr+YYrCt a gCpv+k+v+r+ ed +++++tYeg+Hnh+ Seita.1G334400.1.p 314 MNDGCQWRKYGQKVAKGNPCPRAYYRCTVApGCPVRKQVQRCLEDMSILVTTYEGTHNHP 373 58***************************99****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.0E-31 | 299 | 375 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.88E-27 | 307 | 375 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 28.529 | 309 | 375 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.4E-37 | 314 | 374 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.0E-26 | 315 | 373 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 565 aa Download sequence Send to blast |
MSSKKKRAAA IDLSVEAERR EEEDRSAGDR RDKDGGVGKK EEQFKEQEEA PPKEETGGEE 60 KVVEVVVDQG GDGTKEEIKY RTQQGEEMEE DKQSEEGDGD DESDGAENRA DGKHVVEASG 120 DGDGDDNHTT MVQDEVSAMQ EEMEKMKEEN RMLRRVVDRT VRDYYELQMK LAAYQQQPAD 180 EPKEPEVFLS LGAAAAATTG GFPEPKRKEQ AARRPSVGSD DTDDGKADLG LSLSLRASSS 240 YEEEKMEAAH DFDGGASVAG ADGKAKGYAL LESSKLGAPA AGDLATAGIT SQSVNPANRK 300 TRVSVRVRCQ GPTMNDGCQW RKYGQKVAKG NPCPRAYYRC TVAPGCPVRK QVQRCLEDMS 360 ILVTTYEGTH NHPLPVGATA MASTTSAAAT FMLLSSTSSS SSISEAAGGG GSAAPPYYLS 420 PYLLNSTSHH SSASPLLSAP SSMPSAAPGS ASGMQHLNLF GHSSMLAHQQ APHLKYPWSS 480 SEPSHGGSGG LAGSKRPFWS TAGDEKAATL PDNVGAVMSD PNKFSVAIAA AINSFMGKDS 540 GKDGESSSSK SSNKWGVVES LPPP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 3e-21 | 314 | 375 | 17 | 77 | Probable WRKY transcription factor 4 |
2ayd_A | 2e-21 | 301 | 377 | 1 | 76 | WRKY transcription factor 1 |
2lex_A | 3e-21 | 314 | 375 | 17 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.1G334400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK363247 | 1e-101 | AK363247.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2013L09. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022681574.1 | 0.0 | probable WRKY transcription factor 9 | ||||
TrEMBL | K3YR97 | 0.0 | K3YR97_SETIT; Uncharacterized protein | ||||
STRING | Si016791m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8022 | 34 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68150.1 | 7e-50 | WRKY DNA-binding protein 9 |
Link Out ? help Back to Top | |
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Phytozome | Seita.1G334400.1.p |