PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.1G324800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | MYB | ||||||||
Protein Properties | Length: 385aa MW: 42710.3 Da PI: 7.5032 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 60.5 | 3.6e-19 | 73 | 120 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEde+l ++++++G g+W++ ++ g++R++k+c++rw +yl Seita.1G324800.1.p 73 KGPWTPEEDEKLMEYIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYL 120 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 56.7 | 5.5e-18 | 126 | 171 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+eE++ +++++ lG++ W++Ia++++ gRt++++k++w+++l Seita.1G324800.1.p 126 RGKFTQEEEQTILRLHSVLGNK-WSAIAKHLP-GRTDNEIKNFWNTHL 171 89********************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.9E-27 | 64 | 123 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.27 | 68 | 120 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.24E-33 | 70 | 167 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.3E-15 | 72 | 122 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.9E-18 | 73 | 120 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.63E-12 | 75 | 120 | No hit | No description |
PROSITE profile | PS51294 | 27.878 | 121 | 175 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-28 | 124 | 176 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.5E-17 | 125 | 173 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.7E-17 | 126 | 171 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.04E-13 | 128 | 171 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 385 aa Download sequence Send to blast |
MFNLGLGNRD FRVFIYRKLC SGDQPAKKQG ASRAKGRQQA GCLPPSQLHH PTQVPSHLSM 60 GRSPCCDENG LKKGPWTPEE DEKLMEYIQK HGHGSWRALP KLAGLNRCGK SCRLRWTNYL 120 RPDIKRGKFT QEEEQTILRL HSVLGNKWSA IAKHLPGRTD NEIKNFWNTH LKKKLIQMGF 180 DPMTHRPRTD FFAALPQLIA LANLRQLVEQ RPWDDHAARL QVEAVQAAKL QCLQNLIQSA 240 ASIATNPSSS SINTIPDLEQ IGLLSPPQMS SLSSLPSPSF LESISGQDIV AGQLPDIQIP 300 NSFSEQPTSN DANQNSDFTP KSSVEGENET PKTLLLSENS LPPLTDFPIS NFGDACSASS 360 CDGSSIQFPS WPELFDEQFL SEFV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-32 | 71 | 175 | 5 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00180 | DAP | Transfer from AT1G34670 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.1G324800.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT070045 | 0.0 | BT070045.1 Zea mays full-length cDNA clone ZM_BFb0376N06 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004953959.1 | 0.0 | transcription factor MYB16 | ||||
Swissprot | Q9S9Z2 | 1e-104 | MYB93_ARATH; Transcription factor MYB93 | ||||
TrEMBL | A0A368PSI8 | 0.0 | A0A368PSI8_SETIT; Uncharacterized protein | ||||
STRING | Si017785m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1126 | 37 | 132 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34670.1 | 1e-106 | myb domain protein 93 |
Link Out ? help Back to Top | |
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Phytozome | Seita.1G324800.1.p |
Publications ? help Back to Top | |||
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