PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.1G318500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | Nin-like | ||||||||
Protein Properties | Length: 161aa MW: 18212.7 Da PI: 10.1087 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 82.7 | 3.5e-26 | 36 | 86 | 2 | 52 |
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 k +++e +s++Fs+pi++AA+eL+v++T +K++CR++GI+RWPhRk+k l Seita.1G318500.1.p 36 AKALTFELVSQHFSMPIEQAARELNVGVTGMKKRCRELGIPRWPHRKVKNL 86 589*********************************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 17.768 | 21 | 106 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 5.7E-22 | 39 | 85 | IPR003035 | RWP-RK domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 161 aa Download sequence Send to blast |
MSSLDTAREK SRKLDCDSVE QATQVQGRPA GGGSEAKALT FELVSQHFSM PIEQAARELN 60 VGVTGMKKRC RELGIPRWPH RKVKNLQTLI DNVQELGKET EEVDGHLTRI VVERLQQTKK 120 LIEERPEVPL DEKTKQLSQA CYKENWKRKR GSRPGQHRAS * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.1G318500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004955210.1 | 1e-115 | protein RKD1 | ||||
Swissprot | Q9M9U9 | 6e-36 | RKD1_ARATH; Protein RKD1 | ||||
TrEMBL | A0A368PRG9 | 1e-114 | A0A368PRG9_SETIT; Uncharacterized protein | ||||
STRING | Si020172m | 6e-76 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4590 | 33 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G18790.1 | 2e-38 | RWP-RK domain-containing protein |
Link Out ? help Back to Top | |
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Phytozome | Seita.1G318500.1.p |