PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.1G303900.1.p
Common NameSETIT_016505mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 410aa    MW: 44234.6 Da    PI: 8.4719
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.1G303900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH52.49.7e-17165214255
                         HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         r +h++ E+rRR +iN+++e LrellP+     ++K +Ka+ L +++eYI+ Lq
  Seita.1G303900.1.p 165 RSKHSATEQRRRTKINDRLEILRELLPHG----DQKRDKASFLLEVIEYIRFLQ 214
                         889*************************7....7*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.32E-18161225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-21162228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.66163213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.4E-14165214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.81E-16165218No hitNo description
SMARTSM003533.8E-12169219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MQLFQGEKPA HDFLSLHTGG GSSSPVQHST QGYDLGVQSS LKPLKMGKRR GGGGGGGDGA  60
IGMAPLGLEA DSEKHALPGG VGTFSIRQVP STTQPRGQGV VRDAFAPVLH GSRTEGTPGA  120
ESGARAHSGP ATMWQDSGTD QRSRATRGEG RSSGSSGDQG PSTPRSKHSA TEQRRRTKIN  180
DRLEILRELL PHGDQKRDKA SFLLEVIEYI RFLQEKVQKY ESGHPQKNHE DSSMPWAKVY  240
YRSCWKNTEN ISQVQGGGLS APTQDLNNEQ YCSEKSTVAP TAHFSTQSAG ETSIDDISSQ  300
KATSTPKNWA DADDSTPSKQ PPWLSMSTSD SGDRTLSKNE NNTLHEDTRS LSNAYSQGLL  360
NRLTQALKRS GVDPSQASIS VEINMDKREP SNMHDNLKVH QQVKCLQSS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14349LKMGKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.1G303900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004953769.10.0transcription factor BIM2 isoform X1
TrEMBLA0A368PQU70.0A0A368PQU7_SETIT; Uncharacterized protein
STRINGSi016505m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76237128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.13e-38BES1-interacting Myc-like protein 2