PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Seita.1G303300.1.p

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

Dof

Protein Properties

Length: 289aa MW: 29300.5 Da PI: 8.7496

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.1G303300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.2	2.1e-39	46	106	3	63
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 +a+kcprC+stntkfCyynny+lsqPr+fCk+CrryWtkGG lrnvPvGgg+rk k+sss Seita.1G303300.1.p 46 PEAVKCPRCESTNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGVLRNVPVGGGCRKAKRSSS 106 5789*****************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	7.0E-30	34	103	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.4E-33	48	103	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.329	49	103	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	51	87	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 289 aa Download sequence Send to blast
MQEFQSIPGL AGRLFGGAAA ADLRRAQAQQ GPGARCGGVS PAAAAPEAVK CPRCESTNTK 60 FCYYNNYNLS QPRHFCKSCR RYWTKGGVLR NVPVGGGCRK AKRSSSSSSP SSAPSTPTSA 120 TDAKNPRRAS ASSPRSNSGS GSGSASPTAA VATAPTTPAT PSSNSIGLTS HHTNPFSTVD 180 VAPPAPIFAD HAAALASLFA PPPPPPLPAF TFTAQPKEES AAAAAASAQH LAGQAVPSEA 240 PSSVSTDMTP FASLDTSGMF DLGDASAAAY WNAGSCWTDV HDPSMYLP*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may transactivate seed storage protein genes in developing seeds. {ECO:0000250\|UniProtKB:Q6K537}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00570	DAP	Transfer from AT5G60850	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.1G303300.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by gibberellin. {ECO:0000269\|PubMed:11470159}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC243257	0.0	AC243257.1 Panicum virgatum clone PV_ABa103-H05, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004953765.1	0.0	dof zinc finger protein 4-like
Swissprot	Q6Z345	1e-101	DOF4_ORYSJ; Dof zinc finger protein 4
TrEMBL	A0A368PRA8	0.0	A0A368PRA8_SETIT; Uncharacterized protein
STRING	Pavir.J13498.1.p	1e-109	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6496	30	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60850.1	2e-34	OBF binding protein 4

Link Out ? help Back to Top
Phytozome	Seita.1G303300.1.p

Publications ? help Back to Top
Washio K Identification of Dof proteins with implication in the gibberellin-regulated expression of a peptidase gene following the germination of rice grains. Biochim. Biophys. Acta, 2001. 1520(1): p. 54-62 [PMID:11470159] Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]