PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.1G302900.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family NF-YB
Protein Properties Length: 232aa    MW: 24858.7 Da    PI: 7.009
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.1G302900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB105.34.1e-3363151795
               NF-YB   7 flPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 
                          lP+an++r++++v+P+  k+s  ak+++++c++ef++fv++ea++++++++r+ti+++d++ a+  lGf+dyv+p+++y ++y e ++
  Seita.1G302900.1.p  63 GLPMANLVRLIRQVIPKGVKVSTRAKHLTHDCAVEFVGFVAGEAAEQAKAQHRRTIAPEDFICAFQALGFDDYVQPMSTYTRRYHEHHN 151
                         59**********************************************************************************99765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.104.4E-2562154IPR009072Histone-fold
PfamPF008088.4E-1463126IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamilySSF471132.35E-2164153IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MAKGLIDHQF TTKFTNRERM GRKGKRGAIR EKKGGRDGEK AAPPADDDCA SSSDGEGGAA  60
AAGLPMANLV RLIRQVIPKG VKVSTRAKHL THDCAVEFVG FVAGEAAEQA KAQHRRTIAP  120
EDFICAFQAL GFDDYVQPMS TYTRRYHEHH NNAARGYRGS FVPRPPPPPP DVAVAEEAAV  180
TAPGVPCFSD EEMQYLRSTV PSLHGEQDDE GSSSAYSPTP AGHGYGYTGD M*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_A5e-22641481397NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.1G302900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2432571e-100AC243257.1 Panicum virgatum clone PV_ABa103-H05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022684539.11e-171nuclear transcription factor Y subunit B-1
TrEMBLA0A368PR771e-170A0A368PR77_SETIT; Uncharacterized protein
STRINGSi018339m1e-155(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP136592631
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47670.28e-21nuclear factor Y, subunit B6