PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.1G302800.1.p
Common NameLOC101776527, SETIT_020091mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family NF-YB
Protein Properties Length: 269aa    MW: 28446.4 Da    PI: 6.921
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.1G302800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB171.41e-5335130297
               NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyre 92 
                         reqdr++Pianv+rim++vlP +akis+daket+qecvse+isf+t+ea+++cqre+rkti+++d+lwa++ lGf+dyv+pl+vyl++yre
  Seita.1G302800.1.p  35 REQDRLMPIANVIRIMRRVLPPHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSRLGFDDYVDPLSVYLHRYRE 125
                         89***************************************************************************************** PP

               NF-YB  93 legek 97 
                         +ege 
  Seita.1G302800.1.p 126 FEGEA 130
                         **985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.102.5E-4832133IPR009072Histone-fold
SuperFamilySSF471138.54E-3837138IPR009072Histone-fold
PfamPF008083.3E-2541104IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006154.4E-166886No hitNo description
PROSITE patternPS0068507187IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006154.4E-1687105No hitNo description
PRINTSPR006154.4E-16106124No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0033613Molecular Functionactivating transcription factor binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MDSSSGFLPA GAANGGSNNG GGAQAQQQAA PPPIREQDRL MPIANVIRIM RRVLPPHAKI  60
SDDAKETIQE CVSEYISFIT GEANERCQRE QRKTITAEDV LWAMSRLGFD DYVDPLSVYL  120
HRYREFEGEA RGVGGLPPGA TRGGDHHHHS MAPPPMLKPR APGAAMPPHH HDMQLHHASM  180
YGGAVPPHHG HGHGFAMPHH QGGHHQYLPY PYDPAYGGEH AMAAYYGGSG AAYAPGNGGS  240
GGDGSGSSGG SASQGGGFEH QHPFASYK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_A1e-6033125597NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.1G302800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2432570.0AC243257.1 Panicum virgatum clone PV_ABa103-H05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004953763.10.0nuclear transcription factor Y subunit B-2
TrEMBLK3Z0M50.0K3Z0M5_SETIT; Uncharacterized protein
STRINGSi020091m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20138331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47670.25e-62nuclear factor Y, subunit B6