PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.1G289600.1.p
Common NameLOC101754377, SETIT_017630mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 357aa    MW: 37214.2 Da    PI: 6.7137
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.1G289600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.42.9e-09157204455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +h+ +Er RR+ri +++  L+el+P +    sk   Ka +L + ++Y++sLq
  Seita.1G289600.1.p 157 SHSLAERVRRERISERMRYLQELVPGC----SKVTGKAGMLDEIINYVQSLQ 204
                         8*************************9....556*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.18E-10151208No hitNo description
SuperFamilySSF474591.96E-16151218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.491153203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.1E-16153215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-6157204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.8E-9159209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009911Biological Processpositive regulation of flower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MARCQGTVES LCQGLLDLDD DKFGAMCSAF GYLQEWPDLG AMCGASLGAP AAAAPGAGDG  60
NDTSSCSGSA GAGGFRKRRP DAYLDAKGDG NDMSKRPRGK QQQLGGLGEI AAPGKGKQER  120
PKAGTKKKAE AASTAAAAGQ KTDYIHVRAR RGQATDSHSL AERVRRERIS ERMRYLQELV  180
PGCSKVTGKA GMLDEIINYV QSLQKQVEFL SMKIAASNPV VSFDIVEDLF GRQLKQACNP  240
AALPAMALPA GQLEPACLQM NPMQQVHPSA AAGSTCFGLD MVVNNLYPPP AAARCPVSAA  300
TPVTAAAGPS IEPCLNVNGA AAAAWDVGSQ NLFGGFDAQF QSVESDCLLD NLKMEM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.1G289600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0667150.0BT066715.1 Zea mays full-length cDNA clone ZM_BFb0058C16 mRNA, complete cds.
GenBankKJ7268610.0KJ726861.1 Zea mays clone pUT3402 bHLH transcription factor (bHLH29) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004953614.10.0transcription factor BHLH094
TrEMBLK3YTN40.0K3YTN4_SETIT; Uncharacterized protein
STRINGSi017630m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82523749
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34530.16e-36cryptochrome-interacting basic-helix-loop-helix 1