PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.1G279300.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 342aa    MW: 36453.4 Da    PI: 6.2833
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.1G279300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH482.3e-1595146155
                         CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +r++h ++Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i+  A+eY+k+L+
  Seita.1G279300.1.p  95 QRMTHIAVERNRRRQMNEYLAVLRSLMPEP---YVQRGDQASIVGGAIEYVKELE 146
                         79****************************...*******************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.47E-1593150No hitNo description
SuperFamilySSF474591.96E-1893164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.87294145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-1295146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.5E-1595159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-12100151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MSALVDALCA PPGDAALIYD TFNAASFLFD GAAAAALYDG AGIAVVPPLA QQQAAGEVAP  60
LGDEAQAATS SAPTRVRKRR RRARSCKSRE ETETQRMTHI AVERNRRRQM NEYLAVLRSL  120
MPEPYVQRGD QASIVGGAIE YVKELEQQLQ CLEAQKRTLL VHQHKAAMPD ATPMHHSGSS  180
TKTESATPPP TPSNCSSSVT EDAADHAPPP PFAQFFTYPQ YVWCHSPRGP AAAAEDAGRP  240
GVADIEVTLV ETHASLRVMT PRRPGQLLGL VTGLQALRLA VLHLSVTTLD ALVLYTISVK  300
IEEGCGLATV DDIAAAVHHV LCIIDAEATE QQQMLAAAGP R*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17680RKRRR
27683RKRRRRAR
395106RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.1G279300.1.p
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0386551e-135BT038655.1 Zea mays full-length cDNA clone ZM_BFb0304G04 mRNA, complete cds.
GenBankBT0668891e-135BT066889.1 Zea mays full-length cDNA clone ZM_BFb0091G16 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004953510.10.0transcription factor bHLH94
SwissprotQ9C7T47e-70BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A368PQT00.0A0A368PQT0_SETIT; Uncharacterized protein
STRINGPavir.Ab02502.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37123678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.15e-56bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]