PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.1G272700.1.p
Common NameLOC101758291, SETIT_017977mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family MYB_related
Protein Properties Length: 291aa    MW: 31716.7 Da    PI: 9.4979
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.1G272700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.71.3e-134084147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                        r +WT++E++++++a +++  + Wk+I + +g  +t  q++s+ qky
  Seita.1G272700.1.p 40 RESWTEQEHDKFLEALQLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 84
                        789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.22E-173490IPR009057Homeodomain-like
PROSITE profilePS5129415.4083589IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.3E-73890IPR009057Homeodomain-like
TIGRFAMsTIGR015571.2E-183887IPR006447Myb domain, plants
SMARTSM007175.3E-113987IPR001005SANT/Myb domain
PfamPF002492.3E-114084IPR001005SANT/Myb domain
CDDcd001671.51E-84285No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MVSASTPPLP PPTQPQSDAA GSGEDASKKV RKPYTITKSR ESWTEQEHDK FLEALQLFDR  60
DWKKIEAFVG SKTVIQIRSH AQKYFLKVQK NGTSEHVPPP RPKRKAAHPY PQKASKNEPN  120
YGLKTDSSSI HRNSGMNATV SSWAVSSIPP AVASSMVKED LGPGTLGPNN FCSSSTEGPP  180
RTWQPGETND QINQVPSLRL MPDFAQVYSF LGSVFDPSTS GHLQKLKEMN PIDVETALLL  240
MRNLSINLTS PDFEDQRKLL SSYSTSGGLE LGSSRSSALA TSAPFMIKGE *
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00625PBMTransfer from PK02532.1Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.1G272700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHF6794460.0HF679446.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB40 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004953449.10.0protein REVEILLE 6 isoform X1
SwissprotQ6R0H01e-98RVE3_ARATH; Protein REVEILLE 3
SwissprotQ8H0W31e-98RVE6_ARATH; Protein REVEILLE 6
TrEMBLK3YUN10.0K3YUN1_SETIT; Uncharacterized protein
STRINGSi017977m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP109638111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52660.16e-80MYB_related family protein
Publications ? help Back to Top
  1. Manfield IW, et al.
    Arabidopsis Co-expression Tool (ACT): web server tools for microarray-based gene expression analysis.
    Nucleic Acids Res., 2006. 34(Web Server issue): p. W504-9
    [PMID:16845059]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]
  4. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]