PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Seita.1G270800.2.p

Common Name

LOC101753150, SETIT_018039mg

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

ERF

Protein Properties

Length: 208aa MW: 21668.9 Da PI: 5.8715

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.1G270800.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	52.2	1.5e-16	21	69	3	56
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 y+G+r ++ +g+Wv+eIr+p+ + +r++lg++ tae+Aa+a++ a+++l+g+ Seita.1G270800.2.p 21 YRGIR-CR-SGKWVSEIREPR----KaRRIWLGTYPTAEMAAAAYDVAARALRGA 69 9*9.55.6*****94....36***********************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51032	20.178	20	76	IPR001471	AP2/ERF domain
SMART	SM00380	7.6E-26	20	82	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	2.94E-18	20	76	IPR016177	DNA-binding domain
Pfam	PF00847	3.0E-9	21	68	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	2.1E-26	21	76	IPR001471	AP2/ERF domain
CDD	cd00018	3.67E-17	21	76	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 208 aa Download sequence Send to blast
MATATSSGEP SPRSSGKHAF YRGIRCRSGK WVSEIREPRK ARRIWLGTYP TAEMAAAAYD 60 VAARALRGAD AVLNFPGAIA SRQAPASASP ADIRAAAAAA AAAAQLEHPQ GGEAAATANP 120 PAAAQDRHHQ HHGMSSATAD AAGGYTPQQG IDSGEFMDEE AIFEMPQLLR NMAAGMMMSP 180 PRLSPDTSDE SPDPSEAGES LWSYHDP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	2e-13	17	76	11	72	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.1G270800.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ727703	0.0	KJ727703.1 Zea mays clone pUT5642 AP2-EREBP transcription factor (EREB127) gene, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004953436.1	1e-147	ethylene-responsive transcription factor ERF027
Swissprot	Q9FJ90	2e-48	ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBL	K3YUU3	1e-146	K3YUU3_SETIT; Uncharacterized protein
STRING	Si018039m	1e-147	(Setaria italica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52020.1	1e-29	ERF family protein

Link Out ? help Back to Top
Phytozome	Seita.1G270800.2.p
Entrez Gene	101753150

Publications ? help Back to Top
Li B, et al. Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis. Plant Cell, 2018. 30(1): p. 178-195 [PMID:29317470]