PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.1G268600.2.p
Common NameLOC101780034, SETIT_016736mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C2H2
Protein Properties Length: 586aa    MW: 60212.4 Da    PI: 8.7508
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.1G268600.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.4e-0588110123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++C+ C+k F r  nL+ H r H
  Seita.1G268600.2.p  88 FVCEVCNKGFQREQNLQLHRRGH 110
                         89*******************88 PP
2zf-C2H211.70.00082165187123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         +kC +C+k++  +s+ k H +++
  Seita.1G268600.2.p 165 WKCDKCSKRYAVQSDWKAHSKVC 187
                         58*****************9877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.608.1E-687110IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.24E-787110No hitNo description
SMARTSM003550.004188110IPR015880Zinc finger, C2H2-like
PfamPF121713.8E-588110IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015711.09488110IPR007087Zinc finger, C2H2
PROSITE patternPS00028090110IPR007087Zinc finger, C2H2
SMARTSM00355290130160IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.7E-4153185IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.24E-7160185No hitNo description
SMARTSM00355140165185IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 586 aa     Download sequence    Send to blast
MASNSSAAAV AALFGIRDGG DHQDQIKPLL TQQQLPPAPL LSAAASSSAG SGQAPAASPP  60
VKKKRNLPDP DAEVIALSPK TLMATNRFVC EVCNKGFQRE QNLQLHRRGH NLPWKLKQKD  120
PLQAQRRRVY LCPEPTCAHH DPSRALGDLT GIKKHFCRKH GEKKWKCDKC SKRYAVQSDW  180
KAHSKVCGTR EYRCDCGTLF SRRDSFITHR AFCDALAQES ARLPPPGLTA SHLYGATSAA  240
NMALSLSQVG SHLASTLGGD AHGHHQDLLR LGGGGGAAGR FDHLLGPSGA SAFRPLPPPP  300
SSAFLMGAPQ EFGDGGDGTG PHVFLQGKPF HGLMHLPDLQ GNGAGGGPSA SSAPGLFNLG  360
YIANSANSSG TSSHGHTSQG HLTSDQFSEG GGGGGGGGSE SSAAMLFSGG GSFAGGDHQV  420
APGGGVYNDQ AVMLPQMSAT ALLQKASQMG SSSSAPGGAS VFGGLGGSSA PPSAAHGRAP  480
MLDQSQMHLQ SLMNSLAAGG MFGGGANSGG MIDPRMYDMD QDVKFSQGRG GAEMTRDFLG  540
VGGSGGVMRG MPVVRGEHRD GASDMSSLEA EMKSASSSFT GGRMP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C8e-35161223365Zinc finger protein JACKDAW
5b3h_F8e-35161223365Zinc finger protein JACKDAW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.1G268600.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0542580.0BT054258.1 Zea mays full-length cDNA clone ZM_BFb0200O05 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004953416.10.0protein indeterminate-domain 4, chloroplastic
RefseqXP_022681782.10.0protein indeterminate-domain 4, chloroplastic
RefseqXP_022681786.10.0protein indeterminate-domain 4, chloroplastic
TrEMBLK3YR420.0K3YR42_SETIT; Uncharacterized protein
STRINGSi016736m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02670.11e-102indeterminate(ID)-domain 12