PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Seita.1G268300.1.p

Common Name

LOC101779384, SETIT_017063mg

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

bHLH

Protein Properties

Length: 484aa MW: 52067.5 Da PI: 7.0533

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.1G268300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.1	0.00073	374	407	16	54
HHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 16 iNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 i +++ L++++ + +K + a++L ++++YIk L Seita.1G268300.1.p 374 IGEKITALQQIVSPF-----GKTDTASVLFETIKYIKFL 407 667888999999887.....8****************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	10.182	358	407	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	9.29E-9	373	420	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.92E-4	373	412	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.8E-7	373	416	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 484 aa Download sequence Send to blast
MHLHAAGAVH LQYFMPRHQP HQEATDLQVQ DSSSAVCRRS LSSSTSPAGA AMWEYHHHQA 60 AHAAALQAAS SSASSLFPSW SSSYAGTTAA LLGSAGSAFA TDASSSPPDM RLPAAGEHGH 120 GHPWSQHGEQ SNSTCYRENF LDLLASKNVT QEMFEDVPAD AGHYSAHHQA LSGRLGAGSD 180 VAPIKYEATG SPLFFGNSNP PGMHQGMNMA GCTPCYPYAD HHQMKEGSNQ QQELAAPAMA 240 SFLHQLSTNT SVGMHGSLDY SGMGLDKICQ EGRAVEASGS FGMRSLPDLS SFSGYRSNAE 300 STSSVQPYLR SSNLSDSSKQ EQDIVSARSS SSGSGAASER KKRPSEERTS NVKKSKQEGS 360 KASPPKPQVP KVKIGEKITA LQQIVSPFGK TDTASVLFET IKYIKFLHEQ VQLLSEPYTN 420 SSRNKGNLPW VVEHAETSKG DQAEHDLRNR GLCLVPVSWT PEVYRDGTAM DYWTPAYRGC 480 LYR*

Sequence ? help Back to Top

Protein Sequence Length: 484 aa Download sequence Send to blast

MHLHAAGAVH LQYFMPRHQP HQEATDLQVQ DSSSAVCRRS LSSSTSPAGA AMWEYHHHQA  60
AHAAALQAAS SSASSLFPSW SSSYAGTTAA LLGSAGSAFA TDASSSPPDM RLPAAGEHGH  120
GHPWSQHGEQ SNSTCYRENF LDLLASKNVT QEMFEDVPAD AGHYSAHHQA LSGRLGAGSD  180
VAPIKYEATG SPLFFGNSNP PGMHQGMNMA GCTPCYPYAD HHQMKEGSNQ QQELAAPAMA  240
SFLHQLSTNT SVGMHGSLDY SGMGLDKICQ EGRAVEASGS FGMRSLPDLS SFSGYRSNAE  300
STSSVQPYLR SSNLSDSSKQ EQDIVSARSS SSGSGAASER KKRPSEERTS NVKKSKQEGS  360
KASPPKPQVP KVKIGEKITA LQQIVSPFGK TDTASVLFET IKYIKFLHEQ VQLLSEPYTN  420
SSRNKGNLPW VVEHAETSKG DQAEHDLRNR GLCLVPVSWT PEVYRDGTAM DYWTPAYRGC  480
LYR*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.1G268300.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT042937	1e-162	BT042937.1 Zea mays full-length cDNA clone ZM_BFc0067L11 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004953415.1	0.0	uncharacterized protein LOC101779384
TrEMBL	K3YS19	0.0	K3YS19_SETIT; Uncharacterized protein
STRING	Si017063m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12698	9	10

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31050.1	3e-41	bHLH family protein

Link Out ? help Back to Top
Phytozome	Seita.1G268300.1.p
Entrez Gene	101779384