PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.1G259200.1.p | ||||||||
Common Name | SETIT_017865mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | ERF | ||||||||
Protein Properties | Length: 234aa MW: 24242.7 Da PI: 4.8161 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.8 | 5.7e-18 | 51 | 100 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr + +g+Wv+eIr+p++ + r++lg+f tae+Aa+a++ a+++++g Seita.1G259200.1.p 51 TYRGVRMRA-WGKWVSEIREPRK---KSRIWLGTFATAEMAARAHDVAALAIKG 100 69****998.**********843...6***********************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 22.958 | 51 | 108 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.1E-12 | 51 | 100 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.1E-32 | 51 | 109 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.16E-21 | 51 | 109 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 3.3E-37 | 51 | 114 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.34E-30 | 52 | 110 | No hit | No description |
PRINTS | PR00367 | 1.4E-10 | 52 | 63 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-10 | 74 | 90 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MAMEDSSSGS EPTTSSSAEA PASPTATTAS SSSDSSPGKK RRRTKDGHHP TYRGVRMRAW 60 GKWVSEIREP RKKSRIWLGT FATAEMAARA HDVAALAIKG RAAHLNFPEL ASELPRPATA 120 APKDVQAAAA LAAAADFPAP SANAAGGTKD SDDDGPDASP ASASAAASPP QAQDVDSNPD 180 DALFDLPDLL LDLTRHGPSS CQLSCAASWD DDVCFPGAGA GVFRLEEPLL WEY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-17 | 49 | 108 | 12 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00312 | DAP | Transfer from AT2G44940 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.1G259200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ728262 | 1e-137 | KJ728262.1 Zea mays clone pUT6539 AP2-EREBP transcription factor (EREB176) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004953342.1 | 1e-165 | ethylene-responsive transcription factor ERF039 | ||||
Swissprot | Q8LBQ7 | 3e-53 | ERF34_ARATH; Ethylene-responsive transcription factor ERF034 | ||||
TrEMBL | A0A368PPB0 | 1e-163 | A0A368PPB0_SETIT; Uncharacterized protein | ||||
TrEMBL | K3YUB9 | 1e-163 | K3YUB9_SETIT; Uncharacterized protein | ||||
STRING | Si017865m | 1e-164 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP159 | 35 | 354 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44940.1 | 9e-40 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Seita.1G259200.1.p |
Publications ? help Back to Top | |||
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