PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.1G259000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | ERF | ||||||||
Protein Properties | Length: 296aa MW: 30658.1 Da PI: 6.3466 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.2 | 3.7e-17 | 88 | 137 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++GVr + +g+Wv+eIr+p++ + r++lg+f tae+Aa+a++ a+++++g Seita.1G259000.1.p 88 TFRGVRMRV-WGKWVSEIREPRK---KSRIWLGTFPTAEMAARAHDVAALAIKG 137 59****999.**********843...6***********************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 2.2E-31 | 88 | 146 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.813 | 88 | 145 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.7E-37 | 88 | 151 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.05E-20 | 88 | 146 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.9E-11 | 89 | 137 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.6E-10 | 89 | 100 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.83E-29 | 89 | 147 | No hit | No description |
PRINTS | PR00367 | 7.6E-10 | 111 | 127 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 296 aa Download sequence Send to blast |
MEGDAIHAPT TSSSSSSSSD SGAGSCVING AQELPSKNGK PRKHMMKRKR AASPAAPDGR 60 GAPEAAAVDE RGDGGRRKRG SAGTRHPTFR GVRMRVWGKW VSEIREPRKK SRIWLGTFPT 120 AEMAARAHDV AALAIKGRAA HLNFPHLAHE LPRPAGSPPA AAVDVEQCVS SHAAAETSSS 180 SSAASLEKVA VAAKATAATD VEQCVSSPAA VTSSSPSSAA SSVEAFAGHS EENVLFDLPD 240 LLLDLSNGLC WSPIWAAAPA AAEEYDGGDS LHEPLLWADD DQCWIMDAAA PVQPD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-18 | 74 | 146 | 4 | 73 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.1G259000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ727819 | 1e-107 | KJ727819.1 Zea mays clone pUT5771 AP2-EREBP transcription factor (EREB30) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014660731.1 | 1e-108 | ethylene-responsive transcription factor ERF034 | ||||
TrEMBL | A0A368PPE2 | 0.0 | A0A368PPE2_SETIT; Uncharacterized protein | ||||
STRING | Si017995m | 1e-132 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP159 | 35 | 354 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44940.1 | 1e-40 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Seita.1G259000.1.p |