PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.1G253600.4.p
Common NameLOC101763706, SETIT_016578mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family Trihelix
Protein Properties Length: 491aa    MW: 54171.6 Da    PI: 9.035
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.1G253600.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix43.58.1e-1429783687
            trihelix 36 kkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87
                        +k++  g++rs+k+Ckek+en+ k+y+++k+ + +r++++s  +++f+qlea
  Seita.1G253600.4.p 29 RKLAGLGYHRSAKKCKEKFENVDKYYRRTKDARAGRQDGKS--YRFFSQLEA 78
                        566889*****************************866665..*******85 PP
2trihelix108.93.3e-34311396187
            trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                         rW+k+ev+aLi++r+e++e++ +  +k+plWe++++ mr+ g++rs+k+Ckekwen+nk+ykk+ke++k+r +e+s+tcpyf+ql+a
  Seita.1G253600.4.p 311 RWPKEEVQALIQLRTEKDEQYHDVVAKGPLWEDIAAGMRRIGYHRSAKRCKEKWENINKYYKKVKESNKRR-PEDSKTCPYFHQLDA 396
                         8********************************************************************97.99***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.0E-92979No hitNo description
SMARTSM007171.5E-4308370IPR001005SANT/Myb domain
PROSITE profilePS500907.724310368IPR017877Myb-like domain
CDDcd122034.25E-26310375No hitNo description
PfamPF138376.9E-23311397No hitNo description
SuperFamilySSF466896.39E-5311396IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-4311367IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
MTSPWLRRER EKELTGASAV LCVGARFCRK LAGLGYHRSA KKCKEKFENV DKYYRRTKDA  60
RAGRQDGKSY RFFSQLEALH AAAQRQQQAT GMATVQADHQ PLRTMAAWTA TPATQQLGPP  120
GGSALPDLSF SSMSGSESDS ESDDDLDDGV LEAGLGKGES GGDDREMMAI FEGMMKQVTE  180
KQDAMQRVFL ETLERWEAER TAREEAWRRQ EVARMNHERE QLARERAAAA SRDAALIAFL  240
QRIGGGQQQG EPVRLPPPIA VAMPVPAPMP DRTPPSPRHD ASLQPVPAPP KPEEARAWAG  300
GEGSGSSLPS RWPKEEVQAL IQLRTEKDEQ YHDVVAKGPL WEDIAAGMRR IGYHRSAKRC  360
KEKWENINKY YKKVKESNKR RPEDSKTCPY FHQLDAMYRK KRFAGGGIST APGAYTAAVA  420
VTVLENPNLN PRELEGKSSH DAGKSKNDGQ GNVQGPPGNN GETAPATTVP DDGDKNKDSE  480
LTLHRGQRTT *
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.1G253600.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004953289.10.0trihelix transcription factor GTL1 isoform X2
TrEMBLA0A368PRC40.0A0A368PRC4_SETIT; Uncharacterized protein
STRINGSi016578m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.11e-43Trihelix family protein